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GeT-nextflow-NGL-Bi / wf-Illumina-nf
CeCILL Free Software License Agreement v2.1Pipeline Nextflow
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Some scripts for the methylation analysis of the ChickStress project.
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UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase
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scripts to remap markers as pairs of bait sequences or context sequences.
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UMR GDEC / CLARI-TE_smk
GNU Affero General Public License v3.0Updated -
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DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.
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UMR GDEC / CLARI-TE
Other"clariTE.pl" is a program that post process the xm output file of RepeatMasker.
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NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.
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Pierre Nicolas / Multiple
GNU General Public License v3.0 or laterMultiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.
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The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.
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