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GANGLOFF Hugo / xpcax
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Orfeo ToolBox / pyotb
Apache License 2.0pyotb is a library that enables easy use of the Orfeo Tool Box (OTB) in Python
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URGI-Anagen / panREPET
CeCILL Free Software License Agreement v2.0panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.
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BIOGER / ingenannot
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UMR GDEC / magatt
GNU General Public License v3.0 or laterPipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.
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Omnicrobe / Omnicrobe web
Apache License 2.0Updated -
BATARDIERE Bastien / pyPLNmodels
MIT LicenseUpdated -
GeT-nextflow-NGL-Bi / wf-Illumina-nf
CeCILL Free Software License Agreement v2.1Pipeline Nextflow
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Ludovic Mailleret / multi_page_app_pop_dyn
GNU General Public License v3.0 or laterbasis for development of interactive population dynamics web applications
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Cedric Midoux / workflow_metagenomics
GNU Affero General Public License v3.0Updated -
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mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel
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Yannick Lippi / MA_Trix_App
GNU General Public License v3.0 onlyUpdated -
Ludovic Mailleret / Discrete logistic app
GNU Affero General Public License v3.0Updated -
On-line doctoral training on EMULSION
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DipSO / tsv2properties
BSD 3-Clause "New" or "Revised" LicenseGénération de fichiers .properties de traduction pour Dataverse à partir de fichiers de métadonnées .tsv"
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