Explore projects

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

Transcriptomic analysis, microarray and rnaseq, used in IRHS unit

App Nextcloud permettant de publier des fichiers du Nextcloud INRAE vers DataINRAE

https://umr-astre.pages.mia.inra.fr/sit-methods/

Multiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.

The computer-model tool CRASH (Crops Rotation and Allocation Simulator using Heuristics) aims at helping technical advisors in supporting farmers in their choices and anticipating agricultural water needs depending on crop acreage.

A gene finding software for eukaryotic and prokaryotic organisms.

Pompd: Positive Multistate Protein Design

Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.

Stics configuration for Docker. Inspired by the Rocker Project.

Produce an epidemiological risk map by weighting multiple risk factors. https://umr-astre.pages.mia.inra.fr/mapMCDA/

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

Cirad institutional LaTeX package

A clone of the PMRF code (MIT licence) to be able to add some minor bells and whistles for symmetry handling