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Pipeline Nextflow

Some scripts for the methylation analysis of the ChickStress project.

UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase

NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.

"clariTE.pl" is a program that post process the xm output file of RepeatMasker.

Tutorial example for creation of a snakemake workflow using a singularity container on a hpc

Multiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.

A gene finding software for eukaryotic and prokaryotic organisms.