UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase
Some scripts for the methylation analysis of the ChickStress project.
The pyrocleaner is intended to clean the reads included in the sff file in order to ease the assembly process.
The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.
NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.
"clariTE.pl" is a program that post process the xm output file of RepeatMasker.
Tutorial example for creation of a snakemake workflow using a singularity container on a hpc
Multiple is a program for de novo discovery of DNA motifs
corresponding to Transcription Factor binding sites based on a
probabilistic model of the DNA sequence that incorporates expression
data as covariates.
A gene finding software for eukaryotic and prokaryotic organisms.