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UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase

Some scripts for the methylation analysis of the ChickStress project.

Pipeline Nextflow

The pyrocleaner is intended to clean the reads included in the sff file in order to ease the assembly process.

The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.

NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.

"clariTE.pl" is a program that post process the xm output file of RepeatMasker.

Tutorial example for creation of a snakemake workflow using a singularity container on a hpc

Multiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.

A gene finding software for eukaryotic and prokaryotic organisms.