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Ensemble de scripts utilisés au LRF pour traiter les données d'amplicon sequencing 16S et ITS.

Pipeline Nextflow

This project aims to create a opensilex instance running on docker-compose stack

Nextflow pipeline creating a Neo4j Ortho_KB database.

XyDyS (Xylogenesis Dynamics Simulator) is a software for interactive exploration of computational models of wood formation.

ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Firmicutes genomes.

Docker image with Intel Fortran Compiler (and some other dev tools).

dbeel integration

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.

scripts to remap markers as pairs of bait sequences or context sequences.

Creation and provisioning a Mac OS VirtualBox with R4 tools chain and use it as a GitLab Runner.