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e14d2347

Commit e14d2347 authored 6 years ago by mariabernard

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simplifies some rules, remove parallelisation by chromosom, add combine and genotype GVCF from GATK

parent 8aa366ab

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Snakemake/IMAGE/rules/bwa_mem.rules 40 additions, 0 deletions

Snakemake/IMAGE/rules/bwa_mem.rules
Snakemake/IMAGE/rules/combine_genotypeGVCF.rules 52 additions, 0 deletions

Snakemake/IMAGE/rules/combine_genotypeGVCF.rules
Snakemake/IMAGE/rules/create_regions.rules 0 additions, 19 deletions

Snakemake/IMAGE/rules/create_regions.rules
Snakemake/IMAGE/rules/flagstat.rules 25 additions, 0 deletions

Snakemake/IMAGE/rules/flagstat.rules
Snakemake/IMAGE/rules/md5.rules 18 additions, 0 deletions

Snakemake/IMAGE/rules/md5.rules

with 135 additions and 19 deletions

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