variant calling multiple for IMAGE project

Snakemake/IMAGE/README.pdf

Snakemake/IMAGE/SGE.sh

Snakemake/IMAGE/SLURM.sh

Snakemake/IMAGE/SLURM_chickenFR.sh

Snakemake/IMAGE/Snakefile

Snakemake/IMAGE/config.yaml

Snakemake/IMAGE/config_chickenFR.yaml

Snakemake/IMAGE/data/adapter/adapter.fasta

...emake/IMAGE/data/known_variants/variants_freebayes.vcf.gz

...e/IMAGE/data/known_variants/variants_freebayes.vcf.gz.tbi

Snakemake/IMAGE/data/reads/Sample_A.L001.R1.fastq.gz

Snakemake/IMAGE/data/reads/Sample_A.L001.R2.fastq.gz

Snakemake/IMAGE/data/reads/Sample_A.L002.R1.fastq.gz

Snakemake/IMAGE/data/reads/Sample_A.L002.R2.fastq.gz

Snakemake/IMAGE/data/reads/chicken_FR_1ech.csv

Snakemake/IMAGE/data/reads/test_input_data.csv

Snakemake/IMAGE/data/ref/genome.chr21.dict

Snakemake/IMAGE/data/ref/genome.chr21.fa

Snakemake/IMAGE/data/ref/genome.chr21.fa.amb

Snakemake/IMAGE/data/ref/genome.chr21.fa.ann