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Commit 84aba97a authored by mariabernard's avatar mariabernard
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IMAGE_vqsr, use gatk_prefix instead of variants_gatk in bcftools_stat rule

parent 7f5d7de3
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......@@ -11,11 +11,11 @@ Compute statistics on final vcf file
rule bcftools_stats:
input:
"results/genoFilter/variants_gatk_vqsr_{var}_genFiltered.vcf.gz"
"results/genoFilter/{gatk_prefix}_vqsr_{var}_genFiltered.vcf.gz"
output:
"results/bcftools_stats/variants_gatk_vqsr_{var}_genFiltered.stats"
"results/bcftools_stats/{gatk_prefix}_vqsr_{var}_genFiltered.stats"
log:
"results/bcftools_stats/logs/variants_gatk_vqsr_{var}_genFiltered.stats.log"
"results/bcftools_stats/logs/{gatk_prefix}_vqsr_{var}_genFiltered.stats.log"
threads:
config["bcftools_stats"]["cpu"]
shell:
......
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