diff --git a/Snakemake/IMAGE_vqsr/rules/bcftools_stat.smk b/Snakemake/IMAGE_vqsr/rules/bcftools_stat.smk index 9616a61c41f7fd226123f3299fe9eb833ec08917..a676ee0d4ca36d77e4bcbe9815e86944b6e672ab 100644 --- a/Snakemake/IMAGE_vqsr/rules/bcftools_stat.smk +++ b/Snakemake/IMAGE_vqsr/rules/bcftools_stat.smk @@ -11,11 +11,11 @@ Compute statistics on final vcf file rule bcftools_stats: input: - "results/genoFilter/variants_gatk_vqsr_{var}_genFiltered.vcf.gz" + "results/genoFilter/{gatk_prefix}_vqsr_{var}_genFiltered.vcf.gz" output: - "results/bcftools_stats/variants_gatk_vqsr_{var}_genFiltered.stats" + "results/bcftools_stats/{gatk_prefix}_vqsr_{var}_genFiltered.stats" log: - "results/bcftools_stats/logs/variants_gatk_vqsr_{var}_genFiltered.stats.log" + "results/bcftools_stats/logs/{gatk_prefix}_vqsr_{var}_genFiltered.stats.log" threads: config["bcftools_stats"]["cpu"] shell: