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7d9059dc

Commit 7d9059dc authored 6 years ago by Maria Bernard

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add hardfiltering, splitvcf and vqsr rules

parent bcf64f55

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Changes 8

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Snakemake/IMAGE_vqsr/Snakefile 63 additions, 8 deletions

Snakemake/IMAGE_vqsr/Snakefile
Snakemake/IMAGE_vqsr/config.yaml 44 additions, 13 deletions

Snakemake/IMAGE_vqsr/config.yaml
Snakemake/IMAGE_vqsr/data/dbSNP.vcf.gz 0 additions, 0 deletions

Snakemake/IMAGE_vqsr/data/dbSNP.vcf.gz
Snakemake/IMAGE_vqsr/data/dbSNP_Gallus_gallus_filtered_sorted_1.vcf 0 additions, 0 deletions

...IMAGE_vqsr/data/dbSNP_Gallus_gallus_filtered_sorted_1.vcf
Snakemake/IMAGE_vqsr/rules/hardfiltering.smk 41 additions, 0 deletions

Snakemake/IMAGE_vqsr/rules/hardfiltering.smk
Snakemake/IMAGE_vqsr/rules/intersect_vcf.smk 21 additions, 24 deletions

Snakemake/IMAGE_vqsr/rules/intersect_vcf.smk
Snakemake/IMAGE_vqsr/rules/split_vcf.smk 34 additions, 0 deletions

Snakemake/IMAGE_vqsr/rules/split_vcf.smk
Snakemake/IMAGE_vqsr/rules/vqsr.smk 65 additions, 0 deletions

Snakemake/IMAGE_vqsr/rules/vqsr.smk

with 268 additions and 45 deletions

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