Skip to content
Snippets Groups Projects
Commit 3e61306d authored by mariabernard's avatar mariabernard
Browse files

1000RNASeq_chicken ASE : debug STAR_Index_1 rule

parent a368aae1
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
Snakemake/1000RNASeq_chicken/ASE/rules/STAR.smk
+ 1
− 1
View file @ 3e61306d
......@@ -22,7 +22,7 @@ rule STAR_Index_1:
params:
sjdbOverhang=max([int(x) for x in table.read_length]) - 1
shell:
"STAR --runThreadN {threads} --runMode genomeGenerate --genomeDir Results/STAR_Index1 --genomeFastaFiles {input.fasta} --sjdbOverhang {params.sjdbOverhang} --limitSjdbInsertNsj 2050000 --sjdbGTFfile {input.gtf} "
"STAR --runThreadN {threads} --runMode genomeGenerate --genomeDir Results/STAR_Index_1 --genomeFastaFiles {input.fasta} --sjdbOverhang {params.sjdbOverhang} --limitSjdbInsertNsj 2050000 --sjdbGTFfile {input.gtf} "
def get_fastq_trim(wildcards):
inputs = list()
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment