1000RNASeq_chicken ASE : change rule names

Snakemake/1000RNASeq_chicken/ASE/rules/STAR.smk

@@ -12,7 +12,7 @@ wildcard_constraints:
 
 STAR_INDEX_FILE=['genomeParameters.txt', 'chrName.txt', 'chrLength.txt', 'chrStart.txt', 'chrNameLength.txt', 'exonGeTrInfo.tab', 'geneInfo.tab', 'transcriptInfo.tab', 'exonInfo.tab', 'sjdbList.fromGTF.out.tab', 'sjdbInfo.txt', 'sjdbList.out.tab', 'Genome', 'SA', 'SAindex']
 
-rule STAR_Index:
+rule STAR_Index_1:
     input:
         fasta = 'Results/genomeMasked/' + os.path.splitext(os.path.basename(config['fasta_ref']))[0] + '_masked.fa',
         gtf = os.path.abspath(config["gtf_ref"])
@@ -157,7 +157,7 @@ def get_properly_paired_bam(wildcards):
             return "Results/STAR_Aln_2/" + wildcards.sample + "_rg_genomic.bam"
 
 
-rule rmdup:
+rule RmDuplicates:
     input:
         bam = get_properly_paired_bam
     output: