Commits · git-svn · Cedric Cabau / DRAP

May 16, 2019
- Fix module call for busco in cfg/drap.cfg · a6ffee22
  Cedric Cabau authored 5 years ago
  
  a6ffee22
- Add .gitignore · 411bb584
  Philippe Bardou authored 5 years ago
  
  411bb584
- Before drap-v1.92 release · 733c7d7f
  Philippe Bardou authored 5 years ago
  
  733c7d7f
- Before drap-v1.92 release · 4d7457a1
  Philippe Bardou authored 5 years ago
  
  4d7457a1
Mar 23, 2018
- Forgotten commits · 94b7dcd3
  Cedric Cabau authored 7 years ago
  
  94b7dcd3
- Fix various bugs · af2cc265
  Cedric Cabau authored 7 years ago
  
  af2cc265
- Embed custom version of transrate · 1e12a748
  Cedric Cabau authored 7 years ago
  
  1e12a748
- runMeta now accepts a list of assembly fasta files · 7e7ad652
  Cedric Cabau authored 7 years ago
  
  7e7ad652
- Fix various bugs · 7d2d49c9
  Cedric Cabau authored 7 years ago
  
  7d2d49c9
- Embed custom version of transrate · 62ebbd4b
  Cedric Cabau authored 7 years ago
  
  62ebbd4b
- Documentation update · febde623
  Cedric Cabau authored 7 years ago
  
  febde623
- Add exec right to seqclean binaries · 19e1fd42
  Cedric Cabau authored 7 years ago
  
  19e1fd42
- Create genologin-slurm branch · dd8a1899
  Cedric Cabau authored 7 years ago
  
  dd8a1899
Jan 26, 2018
- runAssessment: fix transrate command by joining fastq with commas and not... · 7a81aeef
  Cedric Cabau authored 7 years ago
  
  runAssessment: fix transrate command by joining fastq with commas and not spaces; Add tmp dir to busco command
  7a81aeef
Oct 02, 2017
- Fix bug for shifting to hypermemq: totalMem=h_vmem*n_cpu · 0a03ec67
  Cedric Cabau authored 7 years ago
  
  0a03ec67
May 24, 2017
- Encrypt email address on DRAP website · 64e2b1f5
  Cedric Cabau authored 7 years ago
  
  64e2b1f5
- Update documentation for busco version 3.0 · a73a4056
  Cedric Cabau authored 7 years ago
  
  a73a4056
- Update documentation for busco version 3.0 · a45539f8
  Cedric Cabau authored 7 years ago
  
  a45539f8
May 23, 2017
- Update documentation for busco version 3.0 · 4f344fd0
  Cedric Cabau authored 7 years ago
  
  4f344fd0
- Fix Dockerfile for busco version 3.0 · fd834042
  Cedric Cabau authored 7 years ago
  
  fd834042
- Move to busco version 3.0 · 828c4f49
  Cedric Cabau authored 7 years ago
  
  828c4f49
May 22, 2017
- Fix minor bugs in version 1.91 · c4f01c8d
  Cedric Cabau authored 7 years ago
  
  c4f01c8d
- Fix minor bugs in version 1.91 · 9c829780
  Cedric Cabau authored 7 years ago
  
  9c829780
Apr 20, 2017
- Set default memory reservation · 0cd8758c
  Cedric Cabau authored 8 years ago
  
  0cd8758c
- Update Dockerfile modification date · ad276597
  Cedric Cabau authored 8 years ago
  
  ad276597
- Remove parallel_fill reservation: run all threads on the MASTER slot · d3e11630
  Cedric Cabau authored 8 years ago
  
  d3e11630
Apr 19, 2017
- Get n cpu for bwa.pl from drap.cfg · 65b0cd8c
  Cedric Cabau authored 8 years ago
  
  65b0cd8c
Apr 18, 2017
- Create tag drap-v1.91 · 04b6ea7c
  Cedric Cabau authored 8 years ago
  
  04b6ea7c
- Add BUSCO_plot to available commands · 4f2bff24
  Cedric Cabau authored 8 years ago
  
  4f2bff24
- Update web site for v1.91 release · da32bcf9
  Cedric Cabau authored 8 years ago
  
  da32bcf9
- Move from version 1.9 to 1.91 · ed4095dc
  Cedric Cabau authored 8 years ago
  
  ed4095dc
- Fix our getOptions usage with parameters with multiple values · 15179a5e
  Cedric Cabau authored 8 years ago
  
  15179a5e
- Add busco graph to assessment report · 390bc961
  Cedric Cabau authored 8 years ago
  
  390bc961
- Fix assessment report bug in the absence of protein reference · e97b1168
  Cedric Cabau authored 8 years ago
  
  e97b1168
- Move to trinity version 2.4.0 · 54d7fc6b
  Cedric Cabau authored 8 years ago
  
  54d7fc6b
- Keep list order after fasta_extract.pl · cf5a367f
  Cedric Cabau authored 8 years ago
  
  cf5a367f
- Parallelize samCorrectVariation.pl execution · 9ad2fdbc
  Cedric Cabau authored 8 years ago
  
  9ad2fdbc
- Ensure compliance with samtools sort 1.3.1 · 2070f379
  Cedric Cabau authored 8 years ago
  
  2070f379
- Fix checking step with norm-merge options · d629a710
  Cedric Cabau authored 8 years ago
  
  d629a710
Apr 13, 2017
- Remove unused fastq_extract.pl script · 5f95e2cf
  Cedric Cabau authored 8 years ago
  
  5f95e2cf