Embed custom version of transrate
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- trunk/plugins/drap-transrate/bin/bam-read 0 additions, 0 deletionstrunk/plugins/drap-transrate/bin/bam-read
- trunk/plugins/drap-transrate/bin/salmon 0 additions, 0 deletionstrunk/plugins/drap-transrate/bin/salmon
- trunk/plugins/drap-transrate/bin/snap-aligner 0 additions, 0 deletionstrunk/plugins/drap-transrate/bin/snap-aligner
- trunk/plugins/drap-transrate/lib/app/.bundle/config 3 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/.bundle/config
- trunk/plugins/drap-transrate/lib/app/Gemfile 3 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/Gemfile
- trunk/plugins/drap-transrate/lib/app/Gemfile.lock 108 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/Gemfile.lock
- trunk/plugins/drap-transrate/lib/app/bin/transrate 23 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/bin/transrate
- trunk/plugins/drap-transrate/lib/app/deps/blast.yaml 27 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/deps/blast.yaml
- trunk/plugins/drap-transrate/lib/app/deps/deps.yaml 46 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/deps/deps.yaml
- trunk/plugins/drap-transrate/lib/app/ext/transrate/Makefile 260 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/ext/transrate/Makefile
- trunk/plugins/drap-transrate/lib/app/ext/transrate/extconf.rb 13 additions, 0 deletions...k/plugins/drap-transrate/lib/app/ext/transrate/extconf.rb
- trunk/plugins/drap-transrate/lib/app/ext/transrate/transrate.c 266 additions, 0 deletions.../plugins/drap-transrate/lib/app/ext/transrate/transrate.c
- trunk/plugins/drap-transrate/lib/app/files.txt 78 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/files.txt
- trunk/plugins/drap-transrate/lib/app/lib/transrate.rb 41 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/lib/transrate.rb
- trunk/plugins/drap-transrate/lib/app/lib/transrate/assembly.rb 255 additions, 0 deletions.../plugins/drap-transrate/lib/app/lib/transrate/assembly.rb
- trunk/plugins/drap-transrate/lib/app/lib/transrate/cmd.rb 25 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/lib/transrate/cmd.rb
- trunk/plugins/drap-transrate/lib/app/lib/transrate/cmdline.rb 592 additions, 0 deletions...k/plugins/drap-transrate/lib/app/lib/transrate/cmdline.rb
- trunk/plugins/drap-transrate/lib/app/lib/transrate/comparative_metrics.rb 160 additions, 0 deletions...ap-transrate/lib/app/lib/transrate/comparative_metrics.rb
- trunk/plugins/drap-transrate/lib/app/lib/transrate/contig.rb 254 additions, 0 deletionstrunk/plugins/drap-transrate/lib/app/lib/transrate/contig.rb
- trunk/plugins/drap-transrate/lib/app/lib/transrate/contig_metrics.rb 58 additions, 0 deletions...ns/drap-transrate/lib/app/lib/transrate/contig_metrics.rb
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