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Commit 65b0cd8c authored by Cedric Cabau's avatar Cedric Cabau
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Get n cpu for bwa.pl from drap.cfg

parent 04b6ea7c
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tags/drap-v1.91/runAssessment
+ 1
− 1
View file @ 65b0cd8c
......@@ -532,7 +532,7 @@ sub get_mapping_analysis {
$opt->{binpath}."/bwa.pl --reference %s --R1 %s %s --bam %s -t %s --vmem %s --mem %s%s",
$assembly, join(" ", @{$opt->{R1}}), (scalar(@{$opt->{R2}}) > 0 ? "--R2 ".join(" ", @{$opt->{R2}}) : ""),
$mapping_out_path, $opt->{env}->{n_cpu}, $opt->{memory}, $opt->{memory},$opt->{local_param}
), $opt->{local_param} ? 8 : 1
), $opt->{local_param} ? $opt->{env}->{n_cpu} : 1
)
);
......
trunk/runAssessment
+ 1
− 1
View file @ 65b0cd8c
......@@ -532,7 +532,7 @@ sub get_mapping_analysis {
$opt->{binpath}."/bwa.pl --reference %s --R1 %s %s --bam %s -t %s --vmem %s --mem %s%s",
$assembly, join(" ", @{$opt->{R1}}), (scalar(@{$opt->{R2}}) > 0 ? "--R2 ".join(" ", @{$opt->{R2}}) : ""),
$mapping_out_path, $opt->{env}->{n_cpu}, $opt->{memory}, $opt->{memory},$opt->{local_param}
), $opt->{local_param} ? 8 : 1
), $opt->{local_param} ? $opt->{env}->{n_cpu} : 1
)
);
......
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