Commits · 65b0cd8c89511dec3967cff9f485edf005a26689 · Cedric Cabau / DRAP

Apr 19, 2017
- Get n cpu for bwa.pl from drap.cfg · 65b0cd8c
  Cedric Cabau authored 8 years ago
  
  65b0cd8c
Apr 18, 2017
- Create tag drap-v1.91 · 04b6ea7c
  Cedric Cabau authored 8 years ago
  
  04b6ea7c
- Add BUSCO_plot to available commands · 4f2bff24
  Cedric Cabau authored 8 years ago
  
  4f2bff24
- Update web site for v1.91 release · da32bcf9
  Cedric Cabau authored 8 years ago
  
  da32bcf9
- Move from version 1.9 to 1.91 · ed4095dc
  Cedric Cabau authored 8 years ago
  
  ed4095dc
- Fix our getOptions usage with parameters with multiple values · 15179a5e
  Cedric Cabau authored 8 years ago
  
  15179a5e
- Add busco graph to assessment report · 390bc961
  Cedric Cabau authored 8 years ago
  
  390bc961
- Fix assessment report bug in the absence of protein reference · e97b1168
  Cedric Cabau authored 8 years ago
  
  e97b1168
- Move to trinity version 2.4.0 · 54d7fc6b
  Cedric Cabau authored 8 years ago
  
  54d7fc6b
- Keep list order after fasta_extract.pl · cf5a367f
  Cedric Cabau authored 8 years ago
  
  cf5a367f
- Parallelize samCorrectVariation.pl execution · 9ad2fdbc
  Cedric Cabau authored 8 years ago
  
  9ad2fdbc
- Ensure compliance with samtools sort 1.3.1 · 2070f379
  Cedric Cabau authored 8 years ago
  
  2070f379
- Fix checking step with norm-merge options · d629a710
  Cedric Cabau authored 8 years ago
  
  d629a710
Apr 13, 2017
- Remove unused fastq_extract.pl script · 5f95e2cf
  Cedric Cabau authored 8 years ago
  
  5f95e2cf
- Clean properly preprocess step output files · 3d65f985
  Cedric Cabau authored 8 years ago
  
  3d65f985
Mar 28, 2017
- Remove branch trinity_SS · 337d8332
  Cedric Cabau authored 8 years ago
  
  337d8332
- Merge branches/trinity_SS changes into the trunk · 25b1efce
  Cedric Cabau authored 8 years ago
  
  25b1efce
- Merge branches/trinity_SS changes into the trunk · 75e8accc
  Cedric Cabau authored 8 years ago
  
  75e8accc
- Trinity last version cannot process stranded data with --run-as-paired option · 1fc76e1e
  Cedric Cabau authored 8 years ago
  
  1fc76e1e
Mar 22, 2017
- Ensure compliance with samtools sort 1.3.1 · b80415af
  Cedric Cabau authored 8 years ago
  
  b80415af
Mar 08, 2017
- Remove unused branches · 312b5b09
  Cedric Cabau authored 8 years ago
  
  312b5b09
- Branch creation: trinity_SS · 4b31484a
  Cedric Cabau authored 8 years ago
  
  4b31484a
- Add new normalization round after merge for multi samples assembly; add option... · 5e217252
  Cedric Cabau authored 8 years ago
  
  Add new normalization round after merge for multi samples assembly; add option --no-norm-merge and --norm-merge-only
  5e217252
- Fix bug on recovery after crash before rmbt step · cbcab3ba
  Cedric Cabau authored 8 years ago
  
  cbcab3ba
- Add params -q=prot -t=dnax for nuc vs prot blat · 0c9df99a
  Cedric Cabau authored 8 years ago
  
  0c9df99a
- Use bwa version 0.7.15 · 76d366cb
  Cedric Cabau authored 8 years ago
  
  76d366cb
- Update DRAP reference · 89a441b3
  Cedric Cabau authored 8 years ago
  
  89a441b3
- Cut N stretches in contigs to avoid bl2seq crash · 3fe7c437
  Cedric Cabau authored 8 years ago
  
  3fe7c437
- Add --rrna option used in /home/sigenae/bin/ncbi_foreign_contam_screen.sh · 6d0b8b4f
  Cedric Cabau authored 8 years ago
  
  6d0b8b4f
Mar 03, 2017
- Temporarily remove option --strand because incompatible with option... · fb9ca6a7
  Cedric Cabau authored 8 years ago
  
  Temporarily remove option --strand because incompatible with option --run_as_paired in last Trinity release
  fb9ca6a7
Feb 24, 2017
- Fix bug at meta-assembly of multi-samples starting · 9eb09d2a
  Cedric Cabau authored 8 years ago
  
  9eb09d2a
Feb 23, 2017
- Increase timeout to max 120 sec for IPC::RUN's run commmand · fcb31273
  Cedric Cabau authored 8 years ago
  
  fcb31273
- Add PeerJ reference to homepage · 9043d313
  Cedric Cabau authored 8 years ago
  
  9043d313
Feb 16, 2017
- Ceil memory reservations in submit_jobs_files.pl · c457bb53
  Cedric Cabau authored 8 years ago
  
  c457bb53
- Fix bl2seq crash in self_chimera_filter.pl; Compress N streches longer than 14 · 016f3364
  Cedric Cabau authored 8 years ago
  
  016f3364
Feb 14, 2017
- Fix runAssessment bug with proteic reference db · b7dd5054
  Cedric Cabau authored 8 years ago
  
  b7dd5054
Feb 02, 2017
- Fix bug in runMeta for meta-assembly of multi-samples runDrap · 973edf5a
  Cedric Cabau authored 8 years ago
  
  973edf5a
Jan 18, 2017
- Trunk believes last version (i.e. 1.9) · 9930521e
  Cedric Cabau authored 8 years ago
  
  9930521e
- Clean trunk · 051a6d1f
  Cedric Cabau authored 8 years ago
  
  051a6d1f
- trunk believe drap-phylofish version · baecb1bf
  Cedric Cabau authored 8 years ago
  
  baecb1bf

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