Commits · cb9155a26ea3b31e647092ad8ba7265ce226cded · QTL / spell-qtl

Dec 30, 2016
- Fixed few things in the CLIs and added man pages. · cb9155a2
  damien authored 8 years ago
  
  cb9155a2
Dec 29, 2016
- Added rough packaging instructions. · 9582208e
  damien authored 8 years ago
  
  9582208e
Dec 28, 2016
- Added output options for spell-marker. Untested. · 4685f2c6
  damien authored 8 years ago
  
  4685f2c6
- Added missing file. · 8fecadf0
  damien authored 8 years ago
  
  8fecadf0
Dec 22, 2016
- Commented out some CLI options and completed format CP. · 3ddff947
  Damien Leroux authored 8 years ago
  
  3ddff947
- Merge branch 'new_model_impl' of... · cd94702d
  damien authored 8 years ago
  
  Merge branch 'new_model_impl' of git+ssh://scm.mulcyber.toulouse.inra.fr//var/lib/gforge/chroot/scmrepos/git/spel/spel into new_model_impl
  cd94702d
Dec 20, 2016
- Applied GPL to all current source code. · 02e225f6
  damien authored 8 years ago
  
  02e225f6
Dec 12, 2016
- Applied MIT license to the code. · 35f5bca3
  Damien Leroux authored 8 years ago
  
  35f5bca3
- Removed expat as a dependency from spell-marker. · ce9eacf1
  Damien Leroux authored 8 years ago
  
  ce9eacf1
Nov 22, 2016
- Added some simulated data and a hidden output in spell-marker to double-check the results. · bbfbc4c1
  Damien Leroux authored 8 years ago
  
  bbfbc4c1
- Replaced cumbersome XML marker obs spec implementation with a sexier... · 5303d460
  Damien Leroux authored 8 years ago
  
  Replaced cumbersome XML marker obs spec implementation with a sexier json-based one. More user-friendly too.
  5303d460
- Deleted unused code. · c6835611
  Damien Leroux authored 8 years ago
  
  c6835611
Nov 18, 2016
- Implemented min-cut to handle table products in huge joint domains. · 014604ce
  Damien Leroux authored 8 years ago
  
  014604ce
- Merge branch 'new_model_impl' of... · fcc66c6b
  Damien Leroux authored 8 years ago
  
  Merge branch 'new_model_impl' of git+ssh://scm.mulcyber.toulouse.inra.fr//var/lib/gforge/chroot/scmrepos/git/spel/spel into new_model_impl
  fcc66c6b
- Pipeline works, but there is an issue with big products. · 04ad4293
  Damien Leroux authored 8 years ago
  
  04ad4293
- Switching to CLion and CMake. · be61fe3b
  damien authored 8 years ago
  
  be61fe3b
Nov 15, 2016
- Need to re-implement the creation of the LV. · 4f0af463
  Damien Leroux authored 8 years ago
  
  Bayesian computation seems to work but we still need the output in the form of locus vectors.
  4f0af463
Nov 09, 2016
- Added final optimization to squeeze factors. · 8e784d99
  Damien Leroux authored 8 years ago
  
  8e784d99
- Added factor computation to new implementation. · 099251aa
  Damien Leroux authored 8 years ago
  
  099251aa
- New implementation of graph_type&co. · eae0fd1c
  Damien Leroux authored 8 years ago
  
  This one is good, the old code was so bad and ugly.
  eae0fd1c
Nov 03, 2016
- Integration in progress. About to trim old code from graphnode. · 91141d66
  Damien Leroux authored 8 years ago
  
  91141d66
Oct 18, 2016
- Now computing domains (new implementation). · 10e3be25
  Damien Leroux authored 8 years ago
  
  10e3be25
Oct 11, 2016
- Creating clean graphs now. Or so it seems. · 5fc743f3
  Damien Leroux authored 8 years ago
  
  5fc743f3
Sep 13, 2016
- Made the algorithm its own include. · eab275fa
  Damien Leroux authored 8 years ago
  
  eab275fa
- It works. The generalized table product. · 5a635461
  Damien Leroux authored 8 years ago
  
  5a635461
Sep 08, 2016
- Implemented on-line computation of the product of N factors and projection on... · c61cd7f0
  Damien Leroux authored 8 years ago
  
  Implemented on-line computation of the product of N factors and projection on a subset of variables.
  c61cd7f0
Jun 20, 2016
- Now able to compute factors once again. · 4211ab81
  Damien Leroux authored 8 years ago
  
  4211ab81
Jun 13, 2016
- Patating is working OK now. Moving on to compiling queries. · 22f21721
  Damien Leroux authored 8 years ago
  
  22f21721
May 31, 2016
- New implementation of message/interface WIP. · a020b07c
  Damien Leroux authored 8 years ago
  
  a020b07c
- Working implementation of hierarchical factor graph generation. · e9e1af77
  Damien Leroux authored 8 years ago
  
  e9e1af77
Apr 29, 2016

New implementation working fine. Factor graph properly built with joint... · ebaefeeb

Damien Leroux authored 8 years ago

New implementation working fine. Factor graph properly built with joint factors as appropriate and spanning tree computation.

ebaefeeb

Apr 06, 2016
- Now featuring dominance blocks in model. Not optional yet. · dd7b2d97
  Damien Leroux authored 8 years ago
  
  dd7b2d97
Mar 24, 2016
- Huge refactoring of frontends (and lower layers as required). WIP. · cfdec1f8
  Damien Leroux authored 8 years ago
  
  cfdec1f8
Mar 11, 2016
- Commit before new experimental branch (new model/frontend implementation). · 85ba6695
  Damien Leroux authored 9 years ago
  
  85ba6695
Feb 11, 2016
- Fixed a bug in connected model blocks, assigning wrong column indices. · e93089bb
  Damien Leroux authored 9 years ago
  
  e93089bb
Feb 10, 2016
- Multiple bugfixes. Now handling Euralis data properly. · a38284dc
  Damien Leroux authored 9 years ago
  
  a38284dc
Jan 25, 2016
- Optimized segment_computer_t for reuse. · 1507a980
  Damien Leroux authored 9 years ago
  
  1507a980
Jan 22, 2016
- Implemented an interface that should be useable in a scripting language. · 9b024df3
  Damien Leroux authored 9 years ago
  
  WIP.
  9b024df3
Jan 20, 2016
- Implemented wrapper around [io]?fstream. · f8a58710
  Damien Leroux authored 9 years ago
  
  f8a58710
Jan 19, 2016
- Fixed bug computing threshold over whole genome. · d50bbd5b
  Damien Leroux authored 9 years ago
  
  Commit la grenouille.
  d50bbd5b

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