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Commit c78a0b80 authored by Jérémy Destin's avatar Jérémy Destin
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fix: Change the column that are display in the germplasm result table. Change... 

fix: Change the column that are display in the germplasm result table. Change the margin of the border to have better display, and fix the tests link to the modifications GNP-4309
parent aa2102a9
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frontend/package-lock.json
View file @ c78a0b80
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......
frontend/src/app/app.component.html
View file @ c78a0b80
<faidare-navbar></faidare-navbar>
<div class="container" style="margin-top: 100px">
<div style="margin-top: 100px ; margin-right: 100px ; margin-left: 100px">
<faidare-error></faidare-error>
<router-outlet></router-outlet>
</div>
......
frontend/src/app/facets/large-facets/large-facets.component.html
View file @ c78a0b80
......@@ -23,7 +23,7 @@
</div>
<div class="card mb-1">
<div class="card-body">
<h3 class="card-title">{{ facet.field | titlecase }}</h3>
<h3 class="card-title">{{ facet.field }}</h3>
<input #typeahead class="form-control" [formControl]="criterion"
[ngbTypeahead]="search"
(selectItem)="selectKey($event)" [resultTemplate]="resultTemplate"
......
frontend/src/app/facets/large-facets/large-facets.component.spec.ts
View file @ c78a0b80
import { LargeFacetsComponent } from './large-facets.component';
import { async, ComponentFixture, TestBed } from '@angular/core/testing';
import {
DataDiscoveryCriteria, DataDiscoveryCriteriaUtils,
DataDiscoveryCriteria,
DataDiscoveryCriteriaUtils,
DataDiscoveryFacet
} from '../../models/data-discovery.model';
import { NgbTypeaheadModule } from '@ng-bootstrap/ng-bootstrap';
......@@ -108,7 +109,7 @@ describe('LargeFacetsComponent', () => {
component.facet = largeFacet;
tester.detectChanges();
expect(tester.facetTitle.textContent).toEqual('Large Facet');
expect(tester.facetTitle.textContent).toEqual('large Facet');
expect(tester.facetInput).toBeTruthy();
});
......
frontend/src/app/facets/small-facets/small-facets.component.html
View file @ c78a0b80
<div class="card mb-1" *ngIf="facet.terms.length && facet.terms.length <= 8">
<div class="card-body">
<h3 class="card-title">{{ facet.field | titlecase }}</h3>
<h3 class="card-title">{{ facet.field }}</h3>
<form [formGroup]="checkBoxes" class="card-text">
<div class="form-check" *ngFor="let term of facet.terms">
......
frontend/src/app/facets/small-facets/small-facets.component.spec.ts
View file @ c78a0b80
......@@ -82,7 +82,7 @@ describe('SmallFacetsComponent', () => {
component.displayGermplasmResult$ = new BehaviorSubject<boolean>(false);
tester.detectChanges();
expect(tester.title).toContainText('Sources');
expect(tester.title).toContainText('sources');
expect(tester.terms[0]).toContainText('SOURCE 1 (10)');
expect(tester.terms[0].attr('for')).toBe('source 1');
......
frontend/src/app/germplasm-result-page/germplasm-result-page.component.html
View file @ c78a0b80
......@@ -61,8 +61,9 @@
<tr>
<td>{{ accession.germplasmName }}</td>
<td>{{ accession.accessionNumber }}</td>
<td>{{ accession.commonCropName }}</td>
<td>{{ accession.genusSpecies }}</td>
<td>{{ accession.instituteName }}</td>
<td>{{ accession.biologicalStatusOfAccessionCode }}</td>
</tr>
</ng-container>
</tbody>
......
frontend/src/app/germplasm-result-page/germplasm-result-page.component.spec.ts
View file @ c78a0b80
......@@ -4,7 +4,7 @@ import { GermplasmResultPageComponent } from './germplasm-result-page.component'
import { RouterTestingModule } from '@angular/router/testing';
import { LoadingSpinnerComponent } from '../loading-spinner/loading-spinner.component';
import { GnpisService } from '../gnpis.service';
import { BrapiGermplasm, GermplasmResults } from '../models/brapi.model';
import { GermplasmResults } from '../models/brapi.model';
import { CardSectionComponent } from '../card-section/card-section.component';
import { NO_ERRORS_SCHEMA } from '@angular/core';
import {
......@@ -14,7 +14,7 @@ import {
DEFAULT_PAGE_SIZE,
MAX_RESULTS
} from '../models/data-discovery.model';
import { GermplasmSearchCriteria } from '../models/gnpis.model';
import { Germplasm, GermplasmSearchCriteria } from '../models/gnpis.model';
import { BehaviorSubject, of } from 'rxjs';
......@@ -86,7 +86,7 @@ describe('GermplasmResultPageComponent', () => {
}
];
const germplasmSearchResult: GermplasmResults<BrapiGermplasm> = {
const germplasmSearchResult: GermplasmResults<Germplasm> = {
metadata: {
pagination: pagination
},
......@@ -114,7 +114,31 @@ describe('GermplasmResultPageComponent', () => {
subtaxa: 'subsp',
subtaxaAuthority: '',
donors: null,
acquisitionDate: 'yesterday'
acquisitionDate: 'yesterday',
genusSpecies: null,
genusSpeciesSubtaxa: null,
taxonSynonyms: null,
taxonCommonNames: null,
taxonComment: null,
geneticNature: null,
comment: null,
photo: null,
holdingInstitute: null,
holdingGenbank: null,
presenceStatus: null,
children: null,
originSite: null,
collectingSite: null,
evaluationSites: null,
collector: null,
breeder: null,
distributors: null,
panel: null,
collection: null,
population: null,
'schema:includedInDataCatalog': null
}, {
germplasmDbId: 'g2',
defaultDisplayName: 'germplam2',
......@@ -137,11 +161,41 @@ describe('GermplasmResultPageComponent', () => {
subtaxa: 'subsp',
subtaxaAuthority: '',
donors: null,
acquisitionDate: 'today'
acquisitionDate: 'today',
genusSpecies: null,
genusSpeciesSubtaxa: null,
taxonSynonyms: null,
taxonCommonNames: null,
taxonComment: null,
geneticNature: null,
comment: null,
photo: null,
holdingInstitute: null,
holdingGenbank: null,
presenceStatus: null,
children: null,
originSite: null,
collectingSite: null,
evaluationSites: null,
collector: null,
breeder: null,
distributors: null,
panel: null,
collection: null,
population: null,
'schema:includedInDataCatalog': null
}],
}
};
const criteria: GermplasmSearchCriteria = {
accessionNumbers: ['G_20'],
germplasmDbIds: null,
......@@ -164,6 +218,7 @@ describe('GermplasmResultPageComponent', () => {
geneticNature: null,
holdingInstitute: null,
sources: null,
types: null,
facetFields: null,
sortBy: 'germplasmName',
......
frontend/src/app/germplasm-result-page/germplasm-result-page.component.ts
View file @ c78a0b80
import { Component, Input, OnInit } from '@angular/core';
import { BrapiGermplasm } from '../models/brapi.model';
import { GnpisService } from '../gnpis.service';
import { GermplasmSearchCriteria } from '../models/gnpis.model';
import { Germplasm, GermplasmSearchCriteria } from '../models/gnpis.model';
import { saveAs } from 'file-saver';
import { ActivatedRoute, Router } from '@angular/router';
import { ActivatedRoute } from '@angular/router';
import {
DataDiscoveryCriteria,
DataDiscoveryCriteriaUtils,
......@@ -24,21 +23,22 @@ import { BehaviorSubject } from 'rxjs';
export class GermplasmResultPageComponent implements OnInit {
germplasm: BrapiGermplasm[];
germplasm: Germplasm[];
localCriteria: GermplasmSearchCriteria = DataDiscoveryCriteriaUtils.emptyGermplasmSearchCriteria();
@Input() criteriaFromForm$: BehaviorSubject<DataDiscoveryCriteria>;
@Input() germplasmSearchCriteria$: BehaviorSubject<GermplasmSearchCriteria>;
@Input() germplasmFacets$: BehaviorSubject<DataDiscoveryFacet[]>;
headers: string[] = ['germplasmName', 'accessionNumber', 'commonCropName', 'instituteName'];
headers: string[] = ['germplasmName', 'accessionNumber', 'genusSpecies', 'instituteName', 'biologicalStatusOfAccessionCode'];
elementPerPage: number[] = [15, 20, 25];
loading: boolean;
fieldSortState: object = {
germplasmName: null,
accessionNumber: null,
commonCropName: null,
instituteName: null
genusSpecies: null,
instituteName: null,
biologicalStatusOfAccessionCode: null
};
pagination = {
......@@ -102,7 +102,8 @@ export class GermplasmResultPageComponent implements OnInit {
accessionNumbers: asArray(criteria.accessions),
synonyms: asArray(criteria.accessions),
sources: asArray(criteria.sources)
// Do not use the source as a criterion because of the ES should request.
// sources: asArray(criteria.sources)
};
this.germplasmSearchCriteria$.next(this.localCriteria);
......@@ -182,7 +183,8 @@ export class GermplasmResultPageComponent implements OnInit {
this.germplasmSearchCriteria$.next(this.localCriteria);
}
formatFacets(facets: DataDiscoveryFacet[]): DataDiscoveryFacet[] {
// Format facets by renaming and merging some facets in one facet.
/*formatFacets(facets: DataDiscoveryFacet[]): DataDiscoveryFacet[] {
const bioStatusAndGeneticNature = [];
let newFacets: DataDiscoveryFacet[] = [];
for (const facet of facets) {
......@@ -206,5 +208,5 @@ export class GermplasmResultPageComponent implements OnInit {
...newFacets
];
return newFacets;
}
}*/
}
frontend/src/app/gnpis.service.spec.ts
View file @ c78a0b80
......@@ -152,6 +152,7 @@ describe('GnpisService', () => {
geneticNature: null,
holdingInstitute: null,
sources: null,
types: 'Germplasm',
facetFields: null,
sortBy: null,
......
frontend/src/app/gnpis.service.ts
View file @ c78a0b80
......@@ -8,7 +8,6 @@ import {
DataDiscoverySource
} from './models/data-discovery.model';
import {
BrapiGermplasm,
BrapiResults,
GermplasmCriteria,
GermplasmResults
......@@ -109,7 +108,7 @@ export class GnpisService {
);
}
germplasmSearch(criteria: GermplasmCriteria): Observable<GermplasmResults<BrapiGermplasm>> {
germplasmSearch(criteria: GermplasmCriteria): Observable<GermplasmResults<Germplasm>> {
return zip(
// Get source by URI
......
frontend/src/app/models/data-discovery.model.ts
View file @ c78a0b80
......@@ -65,6 +65,7 @@ export class DataDiscoveryCriteriaUtils {
biologicalStatus: null,
geneticNature: null,
sources: null,
types: null,
facetFields: ['holdingInstitute',
'biologicalStatus', 'geneticNature', 'country'],
......
frontend/src/app/models/gnpis.model.ts
View file @ c78a0b80
......@@ -23,6 +23,7 @@ export interface GermplasmSearchCriteria {
geneticNature: string[];
holdingInstitute: string[];
sources: string[];