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# Practical course: Transposable Elements identification with [The REPET package](https://forgemia.inra.fr/urgi-anagen/wiki-repet/-/wikis/REPET-V2.5-tutorial)
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```plaintext
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This tutorial was written by Joelle Amselem and Nathalie Choisne in the frame of Elixir and URGI
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TE annotation training sessions, using URGI cloud Virtual Machines.
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Note that REPET v2.5 was performed using Colletotrichum higginsianum dataset.
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This tutorial is an update of the REPET v2.5 training performed using Colletotrichum higginsianum dataset.
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Do not hesitate to report any version incompatibilities.
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You should adapt the command path to your environment.
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```
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* **TEannot pipeline consists of 8 steps that you can launch using only one command line:**
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`nohup launch_TEannot.py -P Chig -C TEannot.cfg -e >& TEannot.log &`
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`nohup launch_TEannot.py -P Chig -C TEannot.cfg >& TEannot.log &`
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**P**: project_name
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