... | ... | @@ -346,7 +346,7 @@ This library contains consensus after filtering of “noCat” consensus built u |
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* Step 1: The first step prepares all the data banks required in the next steps
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`nohup TEannot.py -P Chig -C TEannot.cfg -S 1 > S1.log >& runS1.log &`
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`nohup TEannot.py -P Chig -C TEannot.cfg -S 1 >& runS1.log &`
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* Step 2: aligns the reference TE sequences on each genomic chunk via BLASTER (high sensitivity, followed by MATCHER) AND/OR REPEATMASKER (cutoff at 200) AND/OR CENSOR (high sensitivity)
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