a function to create a heatmap from deseq2 output

a function to create a heatmap from deseq2 output

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• e8cfde50 - simplify keepSamp variable + add output pngs + document

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• b87f8f3c - last error "<<-"

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Thanks again @philipperuiz. AnnotationCol and AnnotationRow do not show up in pictures.

Tested with : celine_robjects.Rdata

load("celine_robjects.Rdata")
data_decontam <- data
out2 = deseq2_fun(data = data_decontam, output = "./deseq/", column1 = "strain_time", verbose = 1, rank = "Genus", 
	comp = "wildtype_t50~mutant_t50,wildtype_t0~mutant_t0")
tt2 <- heatmapDeseq2_fun(out2, data_decontam, "strain_time", "Genus")

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• b87f8f3c...d73d97a4 - 3 commits from branch umrf:master
• cd2e09c7 - Merge branch ranomaly:master into dev_desq2

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added 4 commits

• cd2e09c7...4467d9cd - 3 commits from branch umrf:master
• add3c5e8 - Merge branch ranomaly:master into dev_desq2

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• d54a268d - update heatmap dseq function to deal with multiple output

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create a sub function of deseqheatmap to deal with for loop output. + use complex heatmap

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• 499c55e6 - document / description

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merged

mentioned in commit 0c624310