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# Install
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## Clone ANOMALY repository
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```{bash}
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# Set ANOMALYpath
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ANOMALYpath=/pathtoanomaly/
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git clone git@forgemia.inra.fr:umrf/anomaly.git
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cd /PATHTO/anomaly/test
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```
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## R libraries
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Linux operating system. Here tested with Ubuntu 18.04 LTS.
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cutadapt software for dada2 ITS protocol. https://cutadapt.readthedocs.io/en/stable/installation.html
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R version 3.6.1.
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... | ... | @@ -48,3 +58,7 @@ devtools::install_github("pmartinezarbizu/pairwiseAdonis/pairwiseAdonis") |
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devtools::install_github("grunwaldlab/metacoder")
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```
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## Taxonomy databases
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We provide the R objects for the main database we use in IDTAXA at th following url : |