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Created with Raphaël 2.2.08Nov30Jan25181211435Jul329Jun21917Nov8Sep30Aug10May8Apr18Jan816Dec1527Nov2423191817132Jul17Jun161229May281914126430Apr20Mar528Feb262510717Jan20Dec171616Sep410Jul952Update run_pipeline.md : cluster_config.json deprecatedmastermasterUpdate run_pipeline.md : remove conda options to run the pipeline (deprecated)Update install.mdupdate doc with BED isbps ignore bfg report filesDelete .gitattributesLFS: remove test_data.tar.gz from lfs trackingUPDATE: remove singularity and update gitignoreUPDATE: test data URL added into readme and sphinx-docremove tar.gz from classic tracked filesDockerfile ok and smk rules with container pragmaUpdate: update rules with container path for singularity/dockerMerge branch 'testData' into 'master'TEST: updated test data archive and test_config.yamlAdded .gitattributes to capture LFS trackingLFS: add test data.tar.gz archive to LFSNEW: cluster profile added for compatibility with snakemake v6+clean snakemake rule filesMerge branch '9-sphinx-customisation' into 'master'test with alpine image rather than registry imageUpdate file run_pipeline.mdDOCS: remove absolut path from doc and examplesUpdate file index.rstUpdate file index.rstUpdate 2 filesUpdate file pipeline_conf.mdUpdate file conf.pyUpdate 7 filesUpdate file README.mdUpdate file conf.pyUpdate file conf.pyUpdate conf.pyUpdate conf.pyMerge branch '8-sphinx_doc' into 'master'Add CHANGELOGCICD: update path to markdown fileReadme: add pages urlCICD: add source venvCICD: try to run test script with sphinx-build --help commandCICD: deploy Docker for ci and gitlab-ci.yml