Delete README-hpc2.md

README-hpc2.md

-# Utilisation sur HPC2 (Cluster du mesocentre)
-
-Un environnement conda a été créé pour les dépendances du pipeline.
-
-Pour charger ces dépendances:
-
-```console
-$ module load gcc/8.1.0 python/3.7.1 snakemake/5.6.0 ncbi-blast/2.2.30+ gmap/20200408
-$ conda activate transfertAnnot
-```
-
-Rappel des dépendances:
-
-* snakemake >=5.6 (via les modules)
-* blast+ >=2.2 (via les modules)
-* gmap >= 2020 (via les modules)
-* bedtools >=2.27
-* blat >=36
-* biopython >=1.70
-* exonerate >=2.4
-* genometools >=1.5
-* gffread >=0.11
-* numpy >=1.12
-* pandas >=0.23
-* pysam >=0.15
-* python >=3..5
-* samtools >=1.9
-
-```console
-$ conda list
-# packages in environment at /storage/groups/gdec/bin/tools/miniconda/miniconda2/envs/transfertAnnot:
-#
-# Name                    Version                   Build  Channel
-_libgcc_mutex             0.1                        main  
-bcftools                  1.9                  h47928c2_2    bioconda
-bedtools                  2.27.1               he860b03_3    bioconda
-biopython                 1.70                np112py35_1    bioconda
-blas                      1.0                         mkl  
-blat                      36                            0    bioconda
-bzip2                     1.0.8                h7b6447c_0  
-ca-certificates           2020.1.1                      0  
-certifi                   2018.8.24                py35_1  
-curl                      7.61.0               h84994c4_0  
-exonerate                 2.4.0                haf93ef1_3    bioconda
-freetype                  2.9.1                h8a8886c_1  
-genometools-genometools   1.5.10               h470a237_1    bioconda
-gettext                   0.19.8.1             hd7bead4_3  
-gffread                   0.11.7               h8b12597_0    bioconda
-glib                      2.63.1               h5a9c865_0  
-htslib                    1.9                  h4da6232_3    bioconda
-intel-openmp              2019.4                      243  
-jpeg                      9b                   h024ee3a_2  
-libcurl                   7.61.0               h1ad7b7a_0  
-libdeflate                1.0                  h14c3975_1    bioconda
-libedit                   3.1.20181209         hc058e9b_0  
-libffi                    3.2.1                hd88cf55_4  
-libgcc-ng                 9.1.0                hdf63c60_0  
-libgfortran-ng            7.3.0                hdf63c60_0  
-libpng                    1.6.37               hbc83047_0  
-libssh2                   1.8.0                h9cfc8f7_4  
-libstdcxx-ng              9.1.0                hdf63c60_0  
-libtiff                   4.1.0                h2733197_1  
-lz4-c                     1.9.2                he6710b0_0  
-mkl                       2018.0.3                      1  
-mmtf-python               1.0.2                    py35_0    bioconda
-msgpack-python            0.5.6            py35h6bb024c_1  
-ncurses                   6.1                  he6710b0_1  
-numpy                     1.12.1           py35hca0bb5e_1  
-olefile                   0.46                     py35_0  
-openssl                   1.0.2u               h7b6447c_0  
-pandas                    0.23.4           py35h04863e7_0  
-pcre                      8.43                 he6710b0_0  
-pillow                    5.2.0            py35heded4f4_0  
-pip                       10.0.1                   py35_0  
-pysam                     0.15.2           py35h0380709_0    bioconda
-python                    3.5.6                hc3d631a_0  
-python-dateutil           2.8.1                      py_0  
-pytz                      2020.1                     py_0  
-readline                  7.0                  h7b6447c_5  
-reportlab                 3.5.6            py35he686d34_0  
-samtools                  1.9                 h10a08f8_12    bioconda
-setuptools                40.2.0                   py35_0  
-six                       1.15.0                     py_0  
-sqlite                    3.31.1               h7b6447c_0  
-tk                        8.6.8                hbc83047_0  
-wheel                     0.31.1                   py35_0  
-xz                        5.2.5                h7b6447c_0  
-zlib                      1.2.11               h7b6447c_3  
-zstd                      1.4.4                h0b5b093_3  
-```
-
-On peut ensuite cloner le dépot et utiliser le pipeline.
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