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Commit 6da2c228 authored by Helene Rimbert's avatar Helene Rimbert
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Upload New Singularity definition file

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Bootstrap: docker
From: conda/miniconda3
IncludeCmd: yes
%files
env.yaml /environment.yml
%help
Contains all MAGATT dependancies
%labels
Maintainer helene.rimbert@inrae.fr
Version v1.0
%post
apt-get update && apt-get install -y procps
conda update -n base -c defaults conda
conda env create -n mytools -f /environment.yml
conda clean -a
apt clean
%environment
export LC_ALL=C
export PATH=/usr/local/condabin/:$PATH
. /usr/local/etc/profile.d/conda.sh
conda activate mytools
%runscript
"$@"
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