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Singularity

+Bootstrap: docker
+From: conda/miniconda3
+IncludeCmd: yes
+
+%files
+env.yaml /environment.yml
+
+%help
+Contains all MAGATT dependancies
+
+%labels
+    Maintainer helene.rimbert@inrae.fr
+    Version v1.0
+
+%post
+apt-get update && apt-get install -y  procps
+conda update -n base -c defaults conda
+conda env create -n mytools -f /environment.yml
+conda clean -a
+apt clean
+
+%environment
+export LC_ALL=C
+export PATH=/usr/local/condabin/:$PATH
+. /usr/local/etc/profile.d/conda.sh
+conda activate mytools
+
+%runscript
+"$@"