title: "An overview of ViSEAGO: Visualisation, Semantic similarity, Enrichment Analysis of Gene Ontology."
author:
- name: Aurelien Brionne
affiliation: Institut National de la Recherche Agronomique (INRA)
affiliation: "Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE)"
- name: Amelie Juanchich
affiliation: Institut National de la Recherche Agronomique (INRA)
affiliation: "Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE)"
- name: Christelle Hennequet-Antier
affiliation: Institut National de la Recherche Agronomique (INRA)
affiliation: "Institut national de recherche pour l'agriculture, l'alimentation et l'environnement (INRAE)"
date: "`r format(Sys.time(), '%d %B, %Y')`"
output:
BiocStyle::html_document:
...
...
@@ -45,15 +45,8 @@ ViSEAGO is like a workflow with input lists of genes and associated genomic reso
Firtsly, install the `r BiocStyle::Biocpkg("ViSEAGO")` R package from [Bioconductor](https://www.bioconductor.org/), or [ForgeMIA](https://forgemia.inra.fr/umr-boa/viseago) gitlab.
```{r ViSEAGO_install}
# load ViSEAGO package from Bioconductor
# Install ViSEAGO package from Bioconductor
BiocManager::install("ViSEAGO")
# load ViSEAGO package from gitLab
remotes::install_gitlab(
"umr-boa/viseago",
host = "forgemia.inra.fr",
build_opts = c("--no-resave-data","--no-manual")
)
```
<u>NB:</u> This vignette is not runnable and provide a pseudo-code to illustrate ViSEAGO package capabilities.
