check examples corrections

DESCRIPTION

 Package: ViSEAGO
-Version: 1.1.4
+Version: 1.1.5
 Title: ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
 Author: Aurelien Brionne [aut, cre],
         Amelie Juanchich [aut],
@@ -50,7 +50,7 @@ URL: https://www.bioconductor.org/packages/release/bioc/html/ViSEAGO.html,
      https://forgemia.inra.fr/UMR-BOA/ViSEAGO
 BugReports: https://forgemia.inra.fr/UMR-BOA/ViSEAGO/issues
 biocViews: Software, Annotation, GO, GeneSetEnrichment,  MultipleComparison, Clustering, Visualization
-RoxygenNote: 7.0.0
+RoxygenNote: 7.0.2
 Collate: 
     'genomic_ressource.R'
     'Bioconductor2GO.R'

NEWS

@@ -61,7 +61,4 @@ CHANGES IN VERSION 1.1
  o showIC print patch on GOterms_heatmap
  o GO count update
  o Uniprot2GO connection method update
-
-
-
-
+ o prevent bioconductor errors when check examples

R/Ensembl2GO.R

@@ -32,6 +32,7 @@
 #' # host="fungi.ensembl.org"
 #' # biomart is not available for bacteria
 #'
+#' \dontrun{
 #' # check the Ensembl available biomart (if not known)
 #' # for Animals (host="www.ensembl.org", the default)
 #'  biomaRt::listEnsembl()
@@ -42,6 +43,7 @@
 #'  host="www.ensembl.org",
 #'  version=NULL
 #' )
+#' }
 #' @export
 Ensembl2GO=function(biomart="ensembl",host="www.ensembl.org",version=NULL){
 

README.md

@@ -27,7 +27,7 @@ remotes::install_gitlab(
     devtools::build("ViSEAGO")
 
     # install package (from R console)
-    install.packages("ViSEAGO_1.1.4.tar.gz", repos = NULL, type = "source")
+    install.packages("ViSEAGO_1.1.5.tar.gz", repos = NULL, type = "source")
 ```
 
 ## Citation

man/Ensembl2GO.Rd

@@ -35,6 +35,7 @@ It uses the \code{\link[biomaRt]{useEnsembl}} and  \code{\link[biomaRt]{listData
 # host="fungi.ensembl.org"
 # biomart is not available for bacteria
 
+\dontrun{
 # check the Ensembl available biomart (if not known)
 # for Animals (host="www.ensembl.org", the default)
  biomaRt::listEnsembl()
@@ -46,6 +47,7 @@ Ensembl<-ViSEAGO::Ensembl2GO(
  version=NULL
 )
 }
+}
 \references{
 Durinck S, Spellman P, Birney E and Huber W (2009).
 Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt.