README.Rmd

---
output: github_document
---

<!-- README.md is generated from README.Rmd. Please edit that file -->

```{r, include = FALSE}
knitr::opts_chunk$set(
  echo = FALSE,
  collapse = TRUE,
  comment = "#>"
)
```

# FMD risk validation - Tunisia

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<!-- badges: end -->

Renaud Lancelot, Facundo Muñoz

January 2020

Validation of a qualitative risk assessment of Foot-and-Mouth Disease
in Tunisia with observed data.

Full report: https://umr-astre.pages.mia.inra.fr/fmd_risk_validation/

```{r load}
loadd(
  TN,  # Outiline map of Tunisia (SPDF with 1 polygon)
  ## Map of epi-units (imadas) 
  ## with Expòsition and Introduction risk levels
  ## (SPDF with 2057 polygons)
  FA,
  fig_freq_expositions,
  risk_labs
)
```


```{r cases-and-risk, fig.width = 3}
# tmap_mode(mode = "plot")
readd("fig_fmd_outbreaks")
```
```{r freq-expo, fig.width = 7}
fig_freq_expositions
```