Commits · 5eff694120ef2efd6b44df6d72477f76d236c0cd · SVdetection / svlib

Nov 29, 2019
- Annotate.py -> annotation.py · 5eff6941
  Thomas Faraut authored 5 years ago
  
  5eff6941
Nov 28, 2019
- supp_reads becomes max support reads · 7840de6c
  Thomas Faraut authored 5 years ago
  
  7840de6c
Nov 27, 2019
- Merge branch 'newfilter' of forgemia.inra.fr:svdetection/svlib into newfilter · 6f2a249e
  Thomas Faraut authored 5 years ago
  
  6f2a249e
- modified annotation · 85d17402
  Thomas Faraut authored 5 years ago
  
  85d17402
- Annotate uses SVReader · 3ab9cd8e
  Thomas Faraut authored 5 years ago
  
  3ab9cd8e
- AnnotatedRecord.py becomes Annotate.py · b36c3609
  Thomas Faraut authored 5 years ago
  
  b36c3609
- adding AnnotatedRecord · dddad31d
  Thomas Faraut authored 5 years ago
  
  dddad31d
- new pindel specific filter · 68b5c6df
  Thomas Faraut authored 5 years ago
  
  68b5c6df
- Annotate uses SVReader · d26a53fe
  Thomas Faraut authored 5 years ago
  
  d26a53fe
- AnnotatedRecord.py becomes Annotate.py · 96ab3af1
  Thomas Faraut authored 5 years ago
  
  96ab3af1
- new svreader · 4ed7e17f
  Thomas Faraut authored 5 years ago
  
  4ed7e17f
- adding AnnotatedRecord · 8ece2341
  Thomas Faraut authored 5 years ago
  
  8ece2341
- modify pindel specific filter · cc7adfec
  Thomas Faraut authored 5 years ago
  
  cc7adfec
Nov 26, 2019
- merging works now for a single file · 8d032924
  Thomas Faraut authored 5 years ago
  
  8d032924
Nov 22, 2019
- corrected pindel filter · 0de3d4d1
  Thomas Faraut authored 5 years ago
  
  0de3d4d1
Oct 31, 2019
- new pindel specific filter · a65df1e7
  Thomas Faraut authored 5 years ago
  
  a65df1e7
Sep 10, 2019
- POLYMORPH becomes MONOMORH · b689588e
  Thomas Faraut authored 5 years ago
  
  b689588e
Jul 09, 2019
- updating lib · 748634c1
  Thomas Faraut authored 5 years ago
  
  748634c1
- bob · 37b1eee9
  Thomas Faraut authored 5 years ago
  
  37b1eee9
- adding svtyper_utils · 15f5c616
  Thomas Faraut authored 5 years ago
  
  15f5c616
Jul 08, 2019
- svrunner_utils.py compatible py27 and py36 · 42ac8f47
  Thomas Faraut authored 5 years ago
  
  42ac8f47
Feb 15, 2019
- Back to the correct definition of QUAL colunm: -10 * log(P(locus is reference is all samples)) · 387deb81
  Thomas Faraut authored 6 years ago
  
  387deb81
Dec 04, 2018
- - removing filtering for gaps for genomestrip · 814c02a2
  Thomas Faraut authored 6 years ago
  
  - intersect is now required to be reciprocal for duplicate reoval
  814c02a2
Oct 19, 2018
- adding batch id to record id · 070ff8a5
  Thomas Faraut authored 6 years ago
  
  070ff8a5
Sep 27, 2018
- start en end position according to pysam specifications · dbce6471
  Thomas Faraut authored 6 years ago
  
  dbce6471
Aug 23, 2018
- remove_duplicates a O(n) implementation · 55c0b796
  Thomas Faraut authored 6 years ago
  
  55c0b796
Aug 06, 2018
- new filter for lumpy · 19b663fd
  Thomas Faraut authored 6 years ago
  
  19b663fd
Aug 03, 2018
- sef is self ! · d5422db0
  Thomas Faraut authored 6 years ago
  
  d5422db0
- correcting a bug in remove_duplicate in __init__ · b987ff07
  Thomas Faraut authored 6 years ago
  
  b987ff07
Aug 01, 2018
- correctting merge problems · d3425681
  Thomas Faraut authored 6 years ago
  
  d3425681
- adding pindel.py · 40ab66ee
  Thomas Faraut authored 6 years ago
  
  40ab66ee
- removing duplicates fixed · fd2248a0
  Thomas Faraut authored 6 years ago
  
  fd2248a0
- Fix typo · a89cdd5a
  Floreal Cabanettes authored 6 years ago
  
  a89cdd5a
Jul 31, 2018
- only exact duplicates are merged · 703d3296
  Thomas Faraut authored 6 years ago
  
  703d3296
- removing duplicate calls in pindel (caused by overlapping window calls) · b4fa4174
  Thomas Faraut authored 6 years ago
  
  b4fa4174
Jul 06, 2018
- new filter · 471bbedf
  Thomas Faraut authored 6 years ago
  
  471bbedf
Jul 03, 2018
- removing natsort · 88887be8
  Thomas Faraut authored 6 years ago
  
  88887be8
Jul 02, 2018
- - new criteria for selecting the representative of duplicate calls (based on SQ) · 785c7324
  Thomas Faraut authored 6 years ago
  
  - remove sorting contig based on contig names when adding contigs info to vcf file
  785c7324
Jun 14, 2018
- fixing bug in lumpy parser · 2f124943
  Thomas Faraut authored 6 years ago
  
  2f124943
Jun 12, 2018
- Fix return · f2a499b0
  Floreal Cabanettes authored 6 years ago
  
  f2a499b0

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