corrected pindel filter

svreader/pindel.py

@@ -377,7 +377,7 @@ class PindelReader(SVReader):
     #     return (record.length() > 60)
     def SpecificFilterPass(self, record):
         # fILTER
-        if (abs(record.start-record.end+1) >= 2000 and
+        if (abs(record.start-record.end+1) >= 2000 or
             record.MaxIndSupportingRP() <= 3):
             return False
         else:

svreader/vcfwrapper.py

@@ -80,6 +80,9 @@ class VCFReader(SVReader):
     def getHeader(self):
         return self.vcf_reader.header
 
+    def removeInfoHeaderLine(self, key):
+        self.vcf_reader.header.info.remove_header(key)
+
     def addInfo(self, name, number, type, description):
         self.vcf_reader.header.info.add(id=name,
                                         number=number,