Commits · f9a1cc5011559e9861522f84b902aacba35da965 · SVdetection / popsim

Sep 04, 2019
- bug corrected in variant name INV => DUP · f9a1cc50
  Thomas Faraut authored 5 years ago
  
  f9a1cc50
- typo corrected · 5a0b4323
  Thomas Faraut authored 5 years ago
  
  5a0b4323
- Merge branch 'master' of forgemia.inra.fr:svdetection/popsim · 423054ae
  Thomas Faraut authored 5 years ago
  
  423054ae
- PASS is now the filter column for reference genotypes · 33c7086c
  Thomas Faraut authored 5 years ago
  
  33c7086c
Aug 16, 2019
- adding -mt for parameter max-try · 1a344aec
  Thomas Faraut authored 5 years ago
  
  1a344aec
Jul 23, 2019
- back to profile files · 077b62e3
  Thomas Faraut authored 5 years ago
  
  077b62e3
Jul 09, 2019
- new pirs command · 80ed0ef4
  Thomas Faraut authored 5 years ago
  
  80ed0ef4
- adding INSTALL_PIRS · 8d893306
  Thomas Faraut authored 5 years ago
  
  8d893306
Jul 04, 2019
- cleaning code · 69465f5a
  Thomas Faraut authored 5 years ago
  
  69465f5a
Jul 01, 2019
- updating svlib · 20dc9c45
  Thomas Faraut authored 5 years ago
  
  20dc9c45
Jun 28, 2019
- closing filehandles · 0539a79b
  Thomas Faraut authored 5 years ago
  
  0539a79b
- neabling fastq generation · 0db04aec
  Thomas Faraut authored 5 years ago
  
  0db04aec
Jun 27, 2019
- trying to fix fastq simulation · db8f4256
  Thomas Faraut authored 5 years ago
  
  db8f4256
- Merge branch 'variantclass' · 80454913
  Thomas Faraut authored 5 years ago
  
  Adding the script build_variant_pop.py
  80454913
- functional version of build_variant_pop.py · ab790b02
  Thomas Faraut authored 5 years ago
  
  ab790b02
Jun 26, 2019
- correcting bugs in reading vcf · 34501d5b
  Thomas Faraut authored 5 years ago
  
  34501d5b
- type corrected · 2d08fac3
  Thomas Faraut authored 5 years ago
  
  2d08fac3
- a working version of build_variant_pop.py · ab041fa7
  Thomas Faraut authored 5 years ago
  
  ab041fa7
- intermediate commit · 1594d124
  Thomas Faraut authored 5 years ago
  
  1594d124
- read vcf first step · 3e675cd1
  Thomas Faraut authored 5 years ago
  
  3e675cd1
Jun 25, 2019
- intermediate version variant graph · 70a7d80d
  Thomas Faraut authored 5 years ago
  
  70a7d80d
- intermediate commit · 7d0d68bd
  Thomas Faraut authored 5 years ago
  
  7d0d68bd
- temporary commit · a52f8bf1
  Thomas Faraut authored 5 years ago
  
  a52f8bf1
- new implementation for variants · 97fb7487
  Thomas Faraut authored 5 years ago
  
  97fb7487
Jun 24, 2019
- structuring code for the Variant class · 597f8210
  Thomas Faraut authored 5 years ago
  
  597f8210
Jun 23, 2019
- upgrading variants · d72ba220
  Thomas Faraut authored 5 years ago
  
  d72ba220
Jun 22, 2019
- freq to allele_freq · ed557bdb
  Thomas Faraut authored 5 years ago
  
  ed557bdb
Jun 21, 2019
- new build_variant_pop.py file · 2754d477
  Thomas Faraut authored 5 years ago
  
  2754d477
- buid fasta ok · e764252f
  Thomas Faraut authored 5 years ago
  
  e764252f
Jun 19, 2019
- impreved variant class · 648d5fc3
  Thomas Faraut authored 5 years ago
  
  648d5fc3
- variant improvment · 63243469
  Thomas Faraut authored 5 years ago
  
  63243469
Jun 18, 2019
- removing bob · 2f251f78
  Thomas Faraut authored 5 years ago
  
  2f251f78
- try · 175f1075
  Thomas Faraut authored 5 years ago
  
  175f1075
- adding a Variant class · 042230b9
  Thomas Faraut authored 5 years ago
  
  042230b9
Jun 17, 2019
- enabling dup in load_genotypes_from_file · 25ad85ac
  Thomas Faraut authored 5 years ago
  
  25ad85ac
Jun 12, 2019
- Merge branch 'master' of forgemia.inra.fr:svdetection/popsim · 58c1e9cd
  Thomas Faraut authored 5 years ago
  
  58c1e9cd
- added silent option · 09ecf696
  Thomas Faraut authored 5 years ago
  
  09ecf696
Jun 06, 2019
- New pirs module from galaxy001 repo · 34aa2356
  Thomas Faraut authored 5 years ago
  
  34aa2356
- Removed submodule pirs · 288b56cb
  Thomas Faraut authored 5 years ago
  
  288b56cb
May 15, 2019
- now with config file · 39b21f44
  Thomas Faraut authored 5 years ago
  
  39b21f44

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