Commits · eb62440103fee2283569dd637b39f72781ff3a59 · SVdetection / popsim

Mar 23, 2018
- Fix for pysam 0.14: sort vcf file · eb624401
  Floreal Cabanettes authored 7 years ago
  
  eb624401
Nov 15, 2017
- Fix README · 527b9bce
  Floreal Cabanettes authored 7 years ago
  
  527b9bce
- Fix README · c04c7f7b
  Floreal Cabanettes authored 7 years ago
  
  c04c7f7b
- Remove README text, add pdf version · 45850a01
  Floreal Cabanettes authored 7 years ago
  
  45850a01
- Fix README · 6bac2437
  Floreal Cabanettes authored 7 years ago
  
  6bac2437
- Fix README · 87c3b7c2
  Floreal Cabanettes authored 7 years ago
  
  87c3b7c2
- Fix README · b68358cd
  Floreal Cabanettes authored 7 years ago
  
  b68358cd
- Fix README · 3768eb17
  Floreal Cabanettes authored 7 years ago
  
  3768eb17
- Fix README · 06046539
  Floreal Cabanettes authored 7 years ago
  
  06046539
- Add markdown version for README · 1399a5b5
  Floreal Cabanettes authored 7 years ago
  
  1399a5b5
- Reformat README · ee4cc926
  Floreal Cabanettes authored 7 years ago
  
  ee4cc926
- Reformat README · 3a2550ad
  Floreal Cabanettes authored 7 years ago
  
  3a2550ad
- Fix URL for clone to new repo · 09935f72
  Floreal Cabanettes authored 7 years ago
  
  09935f72
Nov 03, 2017
- Fix a lot of bugs · f0bb4653
  Floreal Cabanettes authored 7 years ago
  
  f0bb4653
Nov 02, 2017
- Fix inversions: reverse complement · 86c8c0be
  Floreal Cabanettes authored 7 years ago
  
  86c8c0be
Oct 26, 2017
- Build results/figures: genotype and filtered results ignored · 0ac88db1
  Floreal Cabanettes authored 7 years ago
  
  0ac88db1
- Add inversions simulations · 6737fa62
  Floreal Cabanettes authored 7 years ago
  
  6737fa62
Sep 15, 2017
- Some fixes, and set ylim 0-100 for recall figure · 9203fae4
  Floreal Cabanettes authored 7 years ago
  
  9203fae4
Sep 12, 2017
- Change None genotype to be N/N · 06baa18f
  Floreal Cabanettes authored 7 years ago
  
  06baa18f
Sep 11, 2017
- Allow several filter and genotype files · 09249c14
  Floreal Cabanettes authored 7 years ago
  
  09249c14
- Fix figures · 4461fed1
  Floreal Cabanettes authored 7 years ago
  
  4461fed1
Aug 25, 2017
- Fix genotypes in build results · 2c7499b4
  Floreal Cabanettes authored 7 years ago
  
  2c7499b4
Jul 12, 2017
- Update jflow command builder to be compatible with the new implementation · 1a201399
  Floreal Cabanettes authored 7 years ago
  
  1a201399
Jul 11, 2017
- Allow to input genotype file with deletions already set · 0b79f4ea
  Floreal Cabanettes authored 7 years ago
  
  0b79f4ea
- Update popsim to the new pirs version · a2dd8a72
  Floreal Cabanettes authored 7 years ago
  
  a2dd8a72
Jun 30, 2017
- Replace vcf.VCFReader by pysam.VariantFile · 4b510898
  Floreal Cabanettes authored 7 years ago
  
  4b510898
- Fix log file to a file instead of stdout/err · 0341b710
  Floreal Cabanettes authored 7 years ago
  
  0341b710
Jun 29, 2017
- Add comment · bd7f6054
  Floreal Cabanettes authored 7 years ago
  
  bd7f6054
- Don't use X server · fec93440
  Floreal Cabanettes authored 7 years ago
  
  fec93440
- Returns exit status · c295497c
  Floreal Cabanettes authored 7 years ago
  
  c295497c
- Remove ungzipped vcf file · 80e9067d
  Floreal Cabanettes authored 7 years ago
  
  80e9067d
- Add minimum number of deletions to generate parameter · b45bc530
  Floreal Cabanettes authored 7 years ago
  
  b45bc530
- Make build_figures callable as a python module · ee7d12b3
  Floreal Cabanettes authored 7 years ago
  
  ee7d12b3
- Prevent deletions to be localized inside N stretches · f3598738
  Floreal Cabanettes authored 7 years ago
  
  f3598738
Jun 23, 2017
- Fix init defaults · bbce30a9
  Floreal Cabanettes authored 7 years ago
  
  bbce30a9
- Fix typo · 85a45270
  Floreal Cabanettes authored 7 years ago
  
  85a45270
- Make build_results compatible with Python 3.4 + code refactoring · 637271b2
  Floreal Cabanettes authored 7 years ago
  
  637271b2
- rename erase_output force_outputdir · aa2d6331
  Floreal Cabanettes authored 7 years ago
  
  aa2d6331
Jun 22, 2017
- Fix chromosoome for orphans · e40c74b6
  Floreal Cabanettes authored 7 years ago
  
  e40c74b6
- Update build pop to enable stdout/err redirecting · 74657bda
  Floreal Cabanettes authored 7 years ago
  
  74657bda

Admin message