Commits · d608a847a09da7362057e8fd101cb66cff72a34d · SVdetection / popsim

Feb 28, 2020
- updating svlib · d608a847
  Thomas Faraut authored 5 years ago
  
  d608a847
Feb 27, 2020
- remote url in https · 5178e983
  Mathieu Charles authored 5 years ago
  
  5178e983
Feb 14, 2020
- Update svlib pointer to last version · e3f393cd
  Mathieu Charles authored 5 years ago
  
  e3f393cd
- test · 85b653a7
  Mathieu Charles authored 5 years ago
  
  85b653a7
Nov 18, 2019
- diploid and not haploid.... for pirs · 69bc4421
  Thomas Faraut authored 5 years ago
  
  69bc4421
Oct 30, 2019
- -d becomes --haploid in pirs command · 1330006e
  Thomas Faraut authored 5 years ago
  
  1330006e
- converting boolean as string (i.e 'False') into boolean) · cc89247b
  Thomas Faraut authored 5 years ago
  
  cc89247b
Sep 06, 2019
- make build_results.py executable · 3e4317ea
  Thomas Faraut authored 5 years ago
  
  3e4317ea
Sep 04, 2019
- bug corrected in variant name INV => DUP · f9a1cc50
  Thomas Faraut authored 5 years ago
  
  f9a1cc50
- typo corrected · 5a0b4323
  Thomas Faraut authored 5 years ago
  
  5a0b4323
- Merge branch 'master' of forgemia.inra.fr:svdetection/popsim · 423054ae
  Thomas Faraut authored 5 years ago
  
  423054ae
- PASS is now the filter column for reference genotypes · 33c7086c
  Thomas Faraut authored 5 years ago
  
  33c7086c
Aug 16, 2019
- adding -mt for parameter max-try · 1a344aec
  Thomas Faraut authored 5 years ago
  
  1a344aec
Jul 23, 2019
- back to profile files · 077b62e3
  Thomas Faraut authored 5 years ago
  
  077b62e3
Jul 09, 2019
- new pirs command · 80ed0ef4
  Thomas Faraut authored 5 years ago
  
  80ed0ef4
- adding INSTALL_PIRS · 8d893306
  Thomas Faraut authored 5 years ago
  
  8d893306
Jul 04, 2019
- cleaning code · 69465f5a
  Thomas Faraut authored 5 years ago
  
  69465f5a
Jul 01, 2019
- updating svlib · 20dc9c45
  Thomas Faraut authored 5 years ago
  
  20dc9c45
Jun 28, 2019
- closing filehandles · 0539a79b
  Thomas Faraut authored 5 years ago
  
  0539a79b
- neabling fastq generation · 0db04aec
  Thomas Faraut authored 5 years ago
  
  0db04aec
Jun 27, 2019
- trying to fix fastq simulation · db8f4256
  Thomas Faraut authored 5 years ago
  
  db8f4256
- Merge branch 'variantclass' · 80454913
  Thomas Faraut authored 5 years ago
  
  Adding the script build_variant_pop.py
  80454913
- functional version of build_variant_pop.py · ab790b02
  Thomas Faraut authored 5 years ago
  
  ab790b02
Jun 26, 2019
- correcting bugs in reading vcf · 34501d5b
  Thomas Faraut authored 5 years ago
  
  34501d5b
- type corrected · 2d08fac3
  Thomas Faraut authored 5 years ago
  
  2d08fac3
- a working version of build_variant_pop.py · ab041fa7
  Thomas Faraut authored 5 years ago
  
  ab041fa7
- intermediate commit · 1594d124
  Thomas Faraut authored 5 years ago
  
  1594d124
- read vcf first step · 3e675cd1
  Thomas Faraut authored 5 years ago
  
  3e675cd1
Jun 25, 2019
- intermediate version variant graph · 70a7d80d
  Thomas Faraut authored 5 years ago
  
  70a7d80d
- intermediate commit · 7d0d68bd
  Thomas Faraut authored 5 years ago
  
  7d0d68bd
- temporary commit · a52f8bf1
  Thomas Faraut authored 5 years ago
  
  a52f8bf1
- new implementation for variants · 97fb7487
  Thomas Faraut authored 5 years ago
  
  97fb7487
Jun 24, 2019
- structuring code for the Variant class · 597f8210
  Thomas Faraut authored 5 years ago
  
  597f8210
Jun 23, 2019
- upgrading variants · d72ba220
  Thomas Faraut authored 5 years ago
  
  d72ba220
Jun 22, 2019
- freq to allele_freq · ed557bdb
  Thomas Faraut authored 5 years ago
  
  ed557bdb
Jun 21, 2019
- new build_variant_pop.py file · 2754d477
  Thomas Faraut authored 5 years ago
  
  2754d477
- buid fasta ok · e764252f
  Thomas Faraut authored 5 years ago
  
  e764252f
Jun 19, 2019
- impreved variant class · 648d5fc3
  Thomas Faraut authored 5 years ago
  
  648d5fc3
- variant improvment · 63243469
  Thomas Faraut authored 5 years ago
  
  63243469
Jun 18, 2019
- removing bob · 2f251f78
  Thomas Faraut authored 5 years ago
  
  2f251f78

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