Commits · 8cac68e89ee1a8ba279766d26668f460651df49d · SVdetection / popsim

Mar 26, 2018
- Fix argparse · 8cac68e8
  Floreal Cabanettes authored 7 years ago
  
  8cac68e8
- Ad type of variant to build_results script · 6e6d44c1
  Floreal Cabanettes authored 7 years ago
  
  6e6d44c1
- Replace arguments file by a file containing list of files · 0f6750eb
  Floreal Cabanettes authored 7 years ago
  
  0f6750eb
- Make build_results working with the new snk pipeline · 3437a5dd
  Floreal Cabanettes authored 7 years ago
  
  3437a5dd
Mar 23, 2018
- Fix printer · 21e1c0c4
  Floreal Cabanettes authored 7 years ago
  
  21e1c0c4
- Fix code · 1d8bbbcd
  Floreal Cabanettes authored 7 years ago
  
  1d8bbbcd
- If quiet, save confirm in txt file · c9fe9ddf
  Floreal Cabanettes authored 7 years ago
  
  c9fe9ddf
- Fix README · e4a46c89
  Floreal Cabanettes authored 7 years ago
  
  e4a46c89
- Fix for pysam 0.14: sort vcf file · eb624401
  Floreal Cabanettes authored 7 years ago
  
  eb624401
Nov 15, 2017
- Fix README · 527b9bce
  Floreal Cabanettes authored 7 years ago
  
  527b9bce
- Fix README · c04c7f7b
  Floreal Cabanettes authored 7 years ago
  
  c04c7f7b
- Remove README text, add pdf version · 45850a01
  Floreal Cabanettes authored 7 years ago
  
  45850a01
- Fix README · 6bac2437
  Floreal Cabanettes authored 7 years ago
  
  6bac2437
- Fix README · 87c3b7c2
  Floreal Cabanettes authored 7 years ago
  
  87c3b7c2
- Fix README · b68358cd
  Floreal Cabanettes authored 7 years ago
  
  b68358cd
- Fix README · 3768eb17
  Floreal Cabanettes authored 7 years ago
  
  3768eb17
- Fix README · 06046539
  Floreal Cabanettes authored 7 years ago
  
  06046539
- Add markdown version for README · 1399a5b5
  Floreal Cabanettes authored 7 years ago
  
  1399a5b5
- Reformat README · ee4cc926
  Floreal Cabanettes authored 7 years ago
  
  ee4cc926
- Reformat README · 3a2550ad
  Floreal Cabanettes authored 7 years ago
  
  3a2550ad
- Fix URL for clone to new repo · 09935f72
  Floreal Cabanettes authored 7 years ago
  
  09935f72
Nov 03, 2017
- Fix a lot of bugs · f0bb4653
  Floreal Cabanettes authored 7 years ago
  
  f0bb4653
Nov 02, 2017
- Fix inversions: reverse complement · 86c8c0be
  Floreal Cabanettes authored 7 years ago
  
  86c8c0be
Oct 26, 2017
- Build results/figures: genotype and filtered results ignored · 0ac88db1
  Floreal Cabanettes authored 7 years ago
  
  0ac88db1
- Add inversions simulations · 6737fa62
  Floreal Cabanettes authored 7 years ago
  
  6737fa62
Sep 15, 2017
- Some fixes, and set ylim 0-100 for recall figure · 9203fae4
  Floreal Cabanettes authored 7 years ago
  
  9203fae4
Sep 12, 2017
- Change None genotype to be N/N · 06baa18f
  Floreal Cabanettes authored 7 years ago
  
  06baa18f
Sep 11, 2017
- Allow several filter and genotype files · 09249c14
  Floreal Cabanettes authored 7 years ago
  
  09249c14
- Fix figures · 4461fed1
  Floreal Cabanettes authored 7 years ago
  
  4461fed1
Aug 25, 2017
- Fix genotypes in build results · 2c7499b4
  Floreal Cabanettes authored 7 years ago
  
  2c7499b4
Jul 12, 2017
- Update jflow command builder to be compatible with the new implementation · 1a201399
  Floreal Cabanettes authored 7 years ago
  
  1a201399
Jul 11, 2017
- Allow to input genotype file with deletions already set · 0b79f4ea
  Floreal Cabanettes authored 7 years ago
  
  0b79f4ea
- Update popsim to the new pirs version · a2dd8a72
  Floreal Cabanettes authored 7 years ago
  
  a2dd8a72
Jun 30, 2017
- Replace vcf.VCFReader by pysam.VariantFile · 4b510898
  Floreal Cabanettes authored 7 years ago
  
  4b510898
- Fix log file to a file instead of stdout/err · 0341b710
  Floreal Cabanettes authored 7 years ago
  
  0341b710
Jun 29, 2017
- Add comment · bd7f6054
  Floreal Cabanettes authored 7 years ago
  
  bd7f6054
- Don't use X server · fec93440
  Floreal Cabanettes authored 7 years ago
  
  fec93440
- Returns exit status · c295497c
  Floreal Cabanettes authored 7 years ago
  
  c295497c
- Remove ungzipped vcf file · 80e9067d
  Floreal Cabanettes authored 7 years ago
  
  80e9067d
- Add minimum number of deletions to generate parameter · b45bc530
  Floreal Cabanettes authored 7 years ago
  
  b45bc530

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