Commits · 3e675cd108b6ef65cf4568b3dbc27ba6013904cc · SVdetection / popsim

Jun 26, 2019
- read vcf first step · 3e675cd1
  Thomas Faraut authored 5 years ago
  
  3e675cd1
Jun 25, 2019
- intermediate version variant graph · 70a7d80d
  Thomas Faraut authored 5 years ago
  
  70a7d80d
- intermediate commit · 7d0d68bd
  Thomas Faraut authored 5 years ago
  
  7d0d68bd
- temporary commit · a52f8bf1
  Thomas Faraut authored 5 years ago
  
  a52f8bf1
- new implementation for variants · 97fb7487
  Thomas Faraut authored 5 years ago
  
  97fb7487
Jun 24, 2019
- structuring code for the Variant class · 597f8210
  Thomas Faraut authored 5 years ago
  
  597f8210
Jun 23, 2019
- upgrading variants · d72ba220
  Thomas Faraut authored 5 years ago
  
  d72ba220
Jun 22, 2019
- freq to allele_freq · ed557bdb
  Thomas Faraut authored 5 years ago
  
  ed557bdb
Jun 21, 2019
- new build_variant_pop.py file · 2754d477
  Thomas Faraut authored 5 years ago
  
  2754d477
- buid fasta ok · e764252f
  Thomas Faraut authored 5 years ago
  
  e764252f
Jun 19, 2019
- impreved variant class · 648d5fc3
  Thomas Faraut authored 5 years ago
  
  648d5fc3
- variant improvment · 63243469
  Thomas Faraut authored 5 years ago
  
  63243469
Jun 18, 2019
- adding a Variant class · 042230b9
  Thomas Faraut authored 5 years ago
  
  042230b9
Jun 12, 2019
- Merge branch 'master' of forgemia.inra.fr:svdetection/popsim · 58c1e9cd
  Thomas Faraut authored 5 years ago
  
  58c1e9cd
- added silent option · 09ecf696
  Thomas Faraut authored 5 years ago
  
  09ecf696
Jun 06, 2019
- New pirs module from galaxy001 repo · 34aa2356
  Thomas Faraut authored 5 years ago
  
  34aa2356
- Removed submodule pirs · 288b56cb
  Thomas Faraut authored 5 years ago
  
  288b56cb
May 15, 2019
- now with config file · 39b21f44
  Thomas Faraut authored 5 years ago
  
  39b21f44
- adding a config file reader · e7c7ada8
  Thomas Faraut authored 5 years ago
  
  e7c7ada8
Feb 19, 2019
- adding config file functionnality · bffa2280
  Thomas Faraut authored 6 years ago
  
  bffa2280
Jan 28, 2019
- adding an option no-reads, hence simulating ony rearrangement genomes · ae01d898
  Thomas Faraut authored 6 years ago
  
  ae01d898
Jan 24, 2019
- Added duplication in the simulator · 4a3ae6cd
  Mathieu Charles authored 6 years ago
  
  4a3ae6cd
Jan 23, 2019
- Add frequency file to be used as default · 0701cdd2
  Mathieu Charles authored 6 years ago
  
  0701cdd2
Jan 21, 2019
- Update remote svlib URL · 3d3bce47
  Celine Noirot authored 6 years ago
  
  3d3bce47
Oct 19, 2018
- updating svlib · d5001b73
  Thomas Faraut authored 6 years ago
  
  d5001b73
Aug 23, 2018
- Upgrade svlib submodule · 86861760
  Floreal Cabanettes authored 6 years ago
  
  86861760
Aug 07, 2018
- Update svlib to latest · 2a305da7
  Floreal Cabanettes authored 6 years ago
  
  2a305da7
- Allow to use custom frequencies for variants · 82c465dc
  Floreal Cabanettes authored 6 years ago
  
  82c465dc
Aug 06, 2018
- Update svlib to latest · 46eedc90
  Floreal Cabanettes authored 6 years ago
  
  46eedc90
Aug 02, 2018
- Update svlib to latest · acdf2c47
  Floreal Cabanettes authored 6 years ago
  
  acdf2c47
- Fix case no interval could be found · 6dd814b1
  Floreal Cabanettes authored 6 years ago
  
  6dd814b1
Aug 01, 2018
- Update svlib to latest · 232075e8
  Floreal Cabanettes authored 6 years ago
  
  232075e8
Jul 31, 2018
- Change default rules: start variant size from 50 · f4c13153
  Floreal Cabanettes authored 6 years ago
  
  f4c13153
- Update svlib to latest · 4e383932
  Floreal Cabanettes authored 6 years ago
  
  4e383932
Jul 06, 2018
- Update svlib to latest · 226950a4
  Floreal Cabanettes authored 6 years ago
  
  226950a4
Jul 04, 2018
- Update to latest popsim · 3bf89867
  Floreal Cabanettes authored 6 years ago
  
  3bf89867
Jul 03, 2018
- update svlib to latest · 84e608da
  Floreal Cabanettes authored 6 years ago
  
  84e608da
- Update svlib to latest · 449d9ed3
  Floreal Cabanettes authored 6 years ago
  
  449d9ed3
Jun 15, 2018
- Ignore unused variant type · 376f6b49
  Floreal Cabanettes authored 6 years ago
  
  376f6b49
- Ignore unused variant type · 78a1702e
  Floreal Cabanettes authored 6 years ago
  
  78a1702e

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