Commits · 33c7086ca4a7216981379adbd28c91924cbe3a32 · SVdetection / popsim

Sep 04, 2019
- PASS is now the filter column for reference genotypes · 33c7086c
  Thomas Faraut authored 5 years ago
  
  33c7086c
Jun 27, 2019
- trying to fix fastq simulation · db8f4256
  Thomas Faraut authored 5 years ago
  
  db8f4256
- Merge branch 'variantclass' · 80454913
  Thomas Faraut authored 5 years ago
  
  Adding the script build_variant_pop.py
  80454913
- functional version of build_variant_pop.py · ab790b02
  Thomas Faraut authored 5 years ago
  
  ab790b02
Jun 26, 2019
- correcting bugs in reading vcf · 34501d5b
  Thomas Faraut authored 5 years ago
  
  34501d5b
- type corrected · 2d08fac3
  Thomas Faraut authored 5 years ago
  
  2d08fac3
- a working version of build_variant_pop.py · ab041fa7
  Thomas Faraut authored 5 years ago
  
  ab041fa7
- intermediate commit · 1594d124
  Thomas Faraut authored 5 years ago
  
  1594d124
- read vcf first step · 3e675cd1
  Thomas Faraut authored 5 years ago
  
  3e675cd1
Jun 25, 2019
- intermediate version variant graph · 70a7d80d
  Thomas Faraut authored 5 years ago
  
  70a7d80d
- intermediate commit · 7d0d68bd
  Thomas Faraut authored 5 years ago
  
  7d0d68bd
- temporary commit · a52f8bf1
  Thomas Faraut authored 5 years ago
  
  a52f8bf1
- new implementation for variants · 97fb7487
  Thomas Faraut authored 5 years ago
  
  97fb7487
Jun 24, 2019
- structuring code for the Variant class · 597f8210
  Thomas Faraut authored 5 years ago
  
  597f8210
Jun 23, 2019
- upgrading variants · d72ba220
  Thomas Faraut authored 5 years ago
  
  d72ba220
Jun 22, 2019
- freq to allele_freq · ed557bdb
  Thomas Faraut authored 5 years ago
  
  ed557bdb
Jun 21, 2019
- new build_variant_pop.py file · 2754d477
  Thomas Faraut authored 5 years ago
  
  2754d477
- buid fasta ok · e764252f
  Thomas Faraut authored 5 years ago
  
  e764252f
Jun 19, 2019
- impreved variant class · 648d5fc3
  Thomas Faraut authored 5 years ago
  
  648d5fc3
- variant improvment · 63243469
  Thomas Faraut authored 5 years ago
  
  63243469
Jun 18, 2019
- removing bob · 2f251f78
  Thomas Faraut authored 5 years ago
  
  2f251f78
- try · 175f1075
  Thomas Faraut authored 5 years ago
  
  175f1075
- adding a Variant class · 042230b9
  Thomas Faraut authored 5 years ago
  
  042230b9
Jun 17, 2019
- enabling dup in load_genotypes_from_file · 25ad85ac
  Thomas Faraut authored 5 years ago
  
  25ad85ac
Jun 12, 2019
- Merge branch 'master' of forgemia.inra.fr:svdetection/popsim · 58c1e9cd
  Thomas Faraut authored 5 years ago
  
  58c1e9cd
- added silent option · 09ecf696
  Thomas Faraut authored 5 years ago
  
  09ecf696
Jun 06, 2019
- New pirs module from galaxy001 repo · 34aa2356
  Thomas Faraut authored 5 years ago
  
  34aa2356
- Removed submodule pirs · 288b56cb
  Thomas Faraut authored 5 years ago
  
  288b56cb
May 15, 2019
- now with config file · 39b21f44
  Thomas Faraut authored 5 years ago
  
  39b21f44
- adding a config file reader · e7c7ada8
  Thomas Faraut authored 5 years ago
  
  e7c7ada8
Feb 19, 2019
- adding config file functionnality · bffa2280
  Thomas Faraut authored 6 years ago
  
  bffa2280
Jan 28, 2019
- adding an option no-reads, hence simulating ony rearrangement genomes · ae01d898
  Thomas Faraut authored 6 years ago
  
  ae01d898
Jan 24, 2019
- Added duplication in the simulator · 4a3ae6cd
  Mathieu Charles authored 6 years ago
  
  4a3ae6cd
Jan 23, 2019
- Add frequency file to be used as default · 0701cdd2
  Mathieu Charles authored 6 years ago
  
  0701cdd2
Jan 21, 2019
- Update remote svlib URL · 3d3bce47
  Celine Noirot authored 6 years ago
  
  3d3bce47
Oct 19, 2018
- updating svlib · d5001b73
  Thomas Faraut authored 6 years ago
  
  d5001b73
Aug 23, 2018
- Upgrade svlib submodule · 86861760
  Floreal Cabanettes authored 6 years ago
  
  86861760
Aug 07, 2018
- Update svlib to latest · 2a305da7
  Floreal Cabanettes authored 6 years ago
  
  2a305da7
- Allow to use custom frequencies for variants · 82c465dc
  Floreal Cabanettes authored 6 years ago
  
  82c465dc
Aug 06, 2018
- Update svlib to latest · 46eedc90
  Floreal Cabanettes authored 6 years ago
  
  46eedc90

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