Filter rules file to only add the variant lines

build_results.py

@@ -910,7 +910,12 @@ def init(output, vcf_files, true_vcf, rules, filtered_vcfs=None, type_v="del", o
 
     ipynb = os.path.join(prg_path, "Summarized_results.ipynb")
     shutil.copy(ipynb, os.path.join(output, os.path.basename(ipynb)))
-    shutil.copy(rules, os.path.join(output, "rules.sim"))
+
+    with open(rules, "r") as rules_in, open(os.path.join(output, "rules.sim"), "w") as rules_out:
+        for line in rules_in:
+            parts = line.rstrip().split("\t")
+            if parts[0] == type_v.upper():
+                rules_out.write(line)
 
     # Build HTML summary:
     ipynb = os.path.join(output, "Summarized_results.ipynb")