Skip to content
Snippets Groups Projects
Commit 415d03b8 authored by Floreal Cabanettes's avatar Floreal Cabanettes
Browse files

Add requirements in README

parent f3d17edf
No related branches found
No related tags found
No related merge requests found
......@@ -33,6 +33,13 @@ git pull origin master
- Python 3
- BioPython for Python3
For build_xls_results script, these python3 modules are required:
- yalm
- pybedtools
- pysam
- vcf
- xslxwriter
################
# How to use ? #
......
import os
import re
......@@ -173,10 +172,8 @@ class SVReader(object):
return (abs(record.sv_len) >= minlen and abs(record.sv_len) <= maxlen)
def SpecificFilterPass(self,record):
return True
#def merging(self,vcf_records, overlap_cutoff = 0.5, left_precision = 200, right_precision = 200):
# return mergeSV(vcf_records, self.getOrderedSamples(), overlap_cutoff, left_precision, right_precision, self.tool_name)
return True
class SVWriter(object):
def __init__(self, file_name, tool_name, template_reader):
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment