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Created with Raphaël 2.2.04Sep328Aug27261916141326Jul23221110985313Jun27May15Feb521Jan1714Dec125423Oct19527Sep24Aug232221201787632131Jul30252320191812643229Jun15141211876129May282422201817161593230Apr2724232019181716121198429Mar2827232221201916151413updating popsimupdating popsimupdating popsim in refactorupdating popsim in masterget_batches in mergebatch kept as the old versionmegebatches functionnalUpdate environment.yamlUpdate lumpysvtyperpy27.yamlUpdate lumpysvtyperpy27.yamlUpdate environment.yamlUpdate lumpysvtyperpy27.yamlUpdate lumpysvtyperpy27.yamlPreparing for simulation work-flow.all snakefiles for refactorupdating popsimrestoring genome.fa.gzPulled down update to submodule_dirupdating popsimnew implementationclean unused filesgit ignores now directories names oldrefbundle.smk becomes masterreorganization for refbundlemerging with alignsnakenew organization for detectionalignsnakealignsnakeUpdate application.properties.exampleMerge branch 'master' of forgemia.inra.fr:svdetection/cnvpipelinesadding delly to condacontrolling for batch system to set SV_PARALLEL_DRMAAremoving -t from delly filter for compatibility with new delly versionSnekamakeCommand py --> smkMerge branch 'alignsnake' of forgemia.inra.fr:svdetection/cnvpipelines into alignsnakeworking align smkMerge branch 'alignsnake' of forgemia.inra.fr:svdetection/cnvpipelines into alignsnakenew factorizationworking 1st stepparam_testparam_testFirst commitupdating popsimsmall modification to application.propertiesUpdate README.md