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Created with Raphaël 2.2.028Jan2728Feb271430Jan282721201620Dec1917161211103229Nov28272625222118151230Oct984127Sep242313121110964328Aug27261916141326Jul23221110985313Jun27May15Feb521Jan1714Dec125423Oct19527Sep24Aug232221201787632131Jul30252320191812643229Jun15141211876129May282422201817161593230Apr2724232019181716Working manta delly lumpy pindelmantamantaWorking manta delly lumpyWorking for Manta Delly Lumpyupdating popsimmastermasterdealing with empty vcf filesMerge branch 'master' of forgemia.inra.fr:svdetection/cnvpipelinestrying to resolveup to date popsimsubmodule get with httpssnakecnv/lib is backhandling empty vscf files for concat and lumpymodification in config_reader -N=1only one svlib in popsimMerge branch 'master' of forgemia.inra.fr:svdetection/cnvpipelinesAdd again concat and jupyter support for mergebatchesfirst stepsnocondanocondaUpdate README.mdmore pep8 compliancefilter_monomorph and filter_callrate false by defaultignoring .ipynb_checkpointsremoving pyc filesa more compliant pep8 codefirst stepes for mantawithinsertionswithinsertionsadding mantajupyter for concatenate detectionconcat vcf for deletion and preparation to new jupyterUpdate manta.smkupdating libadding mantamin support filter := 3new filtering by supportsolved conflictnow branching lib to masterupdating libnewfilternewfiltercleaningtototoolsupport added , DUPLICATES becomes DUPLICATEOF and DUPLICATES now describe the duplicate filtered outnew file permissions fixingwinsertionswinsertionsadding duplicate informations with the new identifiersjupyter in environment.yaml