Commits · 54e6842496f274024a04d29f1dd4b48714f13a15 · SVdetection / cnvpipelines

Apr 19, 2018
- Fix pindel missing output file · 54e68424
  Floreal Cabanettes authored 7 years ago
  
  54e68424
- Restore get_first_bam function, removed by a bad merge · 8914f406
  Floreal Cabanettes authored 7 years ago
  
  8914f406
- Fix typo · 467c264b
  Floreal Cabanettes authored 7 years ago
  
  467c264b
- Fix typo · a36e2e0c
  Floreal Cabanettes authored 7 years ago
  
  a36e2e0c
- Add refbundle parameter to the wrapper · cb68b323
  Floreal Cabanettes authored 7 years ago
  
  cb68b323
- adding an overlap filter · e85000d6
  Thomas Faraut authored 7 years ago
  
  e85000d6
Apr 18, 2018
- Merge branch 'align' into 'master' · cc159109
  Floreal Cabanettes authored 7 years ago
  
  Add align workflow See merge request genotoul-bioinfo/cnvpipelines!6
  cc159109
- Merge branch 'align' of forgemia.inra.fr:genotoul-bioinfo/cnvpipelines into align · e72af18d
  Floreal Cabanettes authored 7 years ago
  
  e72af18d
- Merge master to align branch · df3a3de8
  Floreal Cabanettes authored 7 years ago
  
  df3a3de8
- Add markduplicate to cluster.yaml · 4f4fc2cb
  Floreal Cabanettes authored 7 years ago
  
  4f4fc2cb
- Merge branch 'master' of forgemia.inra.fr:genotoul-bioinfo/cnvpipelines · 1b36b2a0
  Thomas Faraut authored 7 years ago
  
  1b36b2a0
- adding svtype DUP · aeed36c4
  Thomas Faraut authored 7 years ago
  
  aeed36c4
- Fix align pipeline · 46f885f6
  Floreal Cabanettes authored 7 years ago
  
  46f885f6
Apr 17, 2018
- Fix logs · 3392f87d
  Floreal Cabanettes authored 7 years ago
  
  3392f87d
- Fix pipeline · f620cc49
  Floreal Cabanettes authored 7 years ago
  
  f620cc49
- Fix new link of reference · 5324d74b
  Floreal Cabanettes authored 7 years ago
  
  5324d74b
- Merge from master to align · c0c5dfcb
  Floreal Cabanettes authored 7 years ago
  
  c0c5dfcb
- Merge branch 'master' of forgemia.inra.fr:genotoul-bioinfo/cnvpipelines · 26fe43d0
  Floreal Cabanettes authored 7 years ago
  
  26fe43d0
- Fix dry run behavior · 5025dd8b
  Floreal Cabanettes authored 7 years ago
  
  5025dd8b
- fix snakefile · ae0607a8
  Floreal Cabanettes authored 7 years ago
  
  ae0607a8
- Fix typo · 18fd2f74
  Floreal Cabanettes authored 7 years ago
  
  18fd2f74
- Fix log files + link reference in working directory · f2196054
  Floreal Cabanettes authored 7 years ago
  
  f2196054
- resolved conflict for merge · 04788dd4
  Thomas Faraut authored 7 years ago
  
  04788dd4
- Merge branch 'master' into align · 0b898710
  Floreal Cabanettes authored 7 years ago
  
  0b898710
- Use missed keep_wdir · dc0b1ef1
  Floreal Cabanettes authored 7 years ago
  
  dc0b1ef1
- Add add run options to align parser + refactor · 8e4f0e18
  Floreal Cabanettes authored 7 years ago
  
  8e4f0e18
- Merge branch 'master' into align · 17a04290
  Floreal Cabanettes authored 7 years ago
  
  17a04290
- Add keep wdir on dry run + fix bug · baf0005a
  Floreal Cabanettes authored 7 years ago
  
  baf0005a
- inversion de la hierarchie des normes · 4020a8fc
  Thomas Faraut authored 7 years ago
  
  4020a8fc
- log inversion · 7c32aae3
  Thomas Faraut authored 7 years ago
  
  7c32aae3
- Add align workflow to the wrapper · 08247bcd
  Floreal Cabanettes authored 7 years ago
  
  08247bcd
- Add snakefile for align fastq files on reference · 92cdf48f
  Floreal Cabanettes authored 7 years ago
  
  92cdf48f
- a refbundle in genomestrip.snk · 64540de1
  Thomas Faraut authored 7 years ago
  
  64540de1
- log files corrected in genomestrip.snk · dc5d17cb
  Thomas Faraut authored 7 years ago
  
  dc5d17cb
- Merge branch 'merge-batches' into 'master' · d02182a9
  Floreal Cabanettes authored 7 years ago
  
  Merge batches Closes #13 See merge request genotoul-bioinfo/cnvpipelines!5
  d02182a9
- adding svtyper python3 module · 557ec6ae
  Thomas Faraut authored 7 years ago
  
  557ec6ae
- requirements file · 85c94845
  Thomas Faraut authored 7 years ago
  
  85c94845
- completed conflict resolve after merge from master · 2f61fa7b
  Thomas Faraut authored 7 years ago
  
  2f61fa7b
- after merging with master · f1aeb300
  Thomas Faraut authored 7 years ago
  
  f1aeb300
Apr 16, 2018
- lumpy up to date · 9f25fa9f
  Thomas Faraut authored 7 years ago
  
  9f25fa9f