Commits · 22f3bb62f1794563c387c553674461ef1c3ab8c9 · SVdetection / cnvpipelines

Apr 11, 2018
- fixing stdout and stderr for delly and lumpy and other details · 22f3bb62
  Thomas Faraut authored 7 years ago
  
  22f3bb62
Apr 09, 2018
- corrected filtered · 45bbd834
  Thomas Faraut authored 7 years ago
  
  45bbd834
- adding filtered bed and some bug correction · d9b2654c
  Thomas Faraut authored 7 years ago
  
  d9b2654c
- delly-ready pipeline · 9239ba7e
  Thomas Faraut authored 7 years ago
  
  9239ba7e
Apr 08, 2018
- removing extraction · b23f51b5
  Thomas Faraut authored 7 years ago
  
  b23f51b5
Mar 22, 2018
- Merge branch 'clean' · 08fd351e
  Thomas Faraut authored 7 years ago
  
  08fd351e
- in branch clean this time · 74f10393
  Thomas Faraut authored 7 years ago
  
  74f10393
- Fix requirements · 96e7f5ee
  Floreal Cabanettes authored 7 years ago
  
  96e7f5ee
- Clean · 33de4b3a
  Floreal Cabanettes authored 7 years ago
  
  See merge request genotoul-bioinfo/cnvpipelines!2
  33de4b3a
- Merge branch 'master' into clean · 9bdc3fe3
  Floreal Cabanettes authored 7 years ago
  
  9bdc3fe3
- Merge branch 'master' of forgemia.inra.fr:genotoul-bioinfo/cnvpipelines · 51dc1a6a
  Floreal Cabanettes authored 7 years ago
  
  51dc1a6a
- Link index bam files if exists, in wrapper · bf048fb9
  Floreal Cabanettes authored 7 years ago
  
  bf048fb9
- additional cleaning · e7f07366
  Thomas Faraut authored 7 years ago
  
  e7f07366
- Merge branch 'master' into clean · d894641f
  Floreal Cabanettes authored 7 years ago
  
  d894641f
- Fix requirements · acf24cd7
  Floreal Cabanettes authored 7 years ago
  
  acf24cd7
- Merge branch 'master' into clean · 32921820
  Floreal Cabanettes authored 7 years ago
  
  32921820
- Fix genomestrip · a6116728
  Floreal Cabanettes authored 7 years ago
  
  a6116728
- Merge branch 'master' into clean · 65c73610
  Floreal Cabanettes authored 7 years ago
  
  65c73610
- Fix default value in argparse · 8c61be6b
  Floreal Cabanettes authored 7 years ago
  
  8c61be6b
- Merge branch 'master' into clean · 1caa4a5e
  Floreal Cabanettes authored 7 years ago
  
  1caa4a5e
- Fix genomestrip + add drmaa lib dir to ld_library_path · e7cd29f0
  Floreal Cabanettes authored 7 years ago
  
  e7cd29f0
Mar 21, 2018
- Merge master to clean · 4a6487ef
  Floreal Cabanettes authored 7 years ago
  
  4a6487ef
- Update doc · e4fa2ab3
  Floreal Cabanettes authored 7 years ago
  
  e4fa2ab3
- Add chromosomes parameter to detection · 68ed1aa1
  Floreal Cabanettes authored 7 years ago
  
  68ed1aa1
- Fix syntax · 907c695f
  Floreal Cabanettes authored 7 years ago
  
  907c695f
- Fix svtyper on empty merge results · 0f8988dc
  Floreal Cabanettes authored 7 years ago
  
  0f8988dc
- Merge branch 'master' of forgemia.inra.fr:genotoul-bioinfo/cnvpipelines · 80866b88
  Thomas Faraut authored 7 years ago
  
  80866b88
- a working merge script... · 4226bdff
  Thomas Faraut authored 7 years ago
  
  4226bdff
- Fix drmaa for genomestrip · 21f53e9a
  Floreal Cabanettes authored 7 years ago
  
  21f53e9a
- Fix job natives for genomestrip · e3fa7f13
  Floreal Cabanettes authored 7 years ago
  
  e3fa7f13
- Add rerun incomplete option on rerun · 044e1f39
  Floreal Cabanettes authored 7 years ago
  
  044e1f39
- Fix native specs for genomestrip · 7b9e97bd
  Floreal Cabanettes authored 7 years ago
  
  7b9e97bd
- Merge branch 'master' of forgemia.inra.fr:genotoul-bioinfo/cnvpipelines · c66522fa
  Floreal Cabanettes authored 7 years ago
  
  c66522fa
- Add DRMAA options for genomestrip rules and add option to disable them · 680f51fc
  Floreal Cabanettes authored 7 years ago
  
  680f51fc
Mar 20, 2018
- bug corected in delly.py · 0bd37112
  Thomas Faraut authored 7 years ago
  
  0bd37112
- Merge branch 'master' into 'clean' · 7244f1aa
  Floreal Cabanettes authored 7 years ago
  
  # Conflicts: # snakecnv/bin/extractreadsbychrom.py
  7244f1aa
- Fix pindel statfile rule · f75ffa66
  Floreal Cabanettes authored 7 years ago
  
  f75ffa66
- Make compatible to the new pysam 0.14 · b9bde4cd
  Floreal Cabanettes authored 7 years ago
  
  b9bde4cd
- bug correction · 177d0cdf
  Thomas Faraut authored 7 years ago
  
  177d0cdf
Mar 19, 2018
- - extracted bam files as temp files · 08b97951
  Thomas Faraut authored 7 years ago
  
  - pindel uses now the complete bam files (ie in data/bams)
  08b97951