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Commit b8004357 authored by Floreal Cabanettes's avatar Floreal Cabanettes
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Fix typo

parent 18c8e335
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......@@ -34,6 +34,6 @@ rule cnvpipeline:
stdout="{batch}/logs/cnvpipeline/{chrom}.o",
stderr="{batch}/logs/cnvpipeline/{chrom}.e"
shell:
"cnvpipeline.py --bamplist {input.bamlist} --reference {input.genome} --metadata {params.metadata} "
"cnvpipeline.py --bamlist {input.bamlist} --reference {input.genome} --metadata {params.metadata} "
"--gendermap {input.gendermap} --outdir {wildcards.batch}/cnvpipeline/{wildcards.chrom} "
"--outprefix cnvpipeline_{wildcards.chrom} --interval-list {input.intervallist} 1> {log.stdout} 2> {log.stderr}"
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