Skip to content
Snippets Groups Projects
Commit 569ba55c authored by Floreal Cabanettes's avatar Floreal Cabanettes
Browse files

Fix refbundle: make it compatible with the new findNstreches script API

parent 94ae3641
No related branches found
No related tags found
No related merge requests found
......@@ -243,8 +243,10 @@ rule nstretches:
PREFIX+".Nstretch.bed"
params:
nstrech =config['maxNstretches']
threads:
1
shell:
"findNstretches.py -f {input} -m {params.nstrech} > {output}"
"findNstretches.py -f {input} -m {params.nstrech} -o {output} -t {threads}"
rule splitchroms:
input:
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment