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ce77c076

Commit ce77c076 authored 3 years ago by Skander Hatira

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added hyper,hypo and overall methylation files generation, plus checked CI

parent 6154e3b4

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Changes 10

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workflow/envs/dmrcaller.yaml 0 additions, 180 deletions

workflow/envs/dmrcaller.yaml
workflow/rules/computeDmrs.smk 3 additions, 31 deletions

workflow/rules/computeDmrs.smk
workflow/rules/generate_plots.smk 0 additions, 13 deletions

workflow/rules/generate_plots.smk
workflow/scripts/common.R 0 additions, 11 deletions

workflow/scripts/common.R
workflow/scripts/compute.R 0 additions, 118 deletions

workflow/scripts/compute.R
workflow/scripts/convert.py 0 additions, 9 deletions

workflow/scripts/convert.py
workflow/scripts/methylkit.R 24 additions, 0 deletions

workflow/scripts/methylkit.R
workflow/scripts/pairwise_reports.R 0 additions, 26 deletions

workflow/scripts/pairwise_reports.R
workflow/scripts/plots.R 0 additions, 35 deletions

workflow/scripts/plots.R
workflow/scripts/read_report.R 0 additions, 23 deletions

workflow/scripts/read_report.R

with 27 additions and 446 deletions

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