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Commit 475e5769 authored by Samuel Mondy's avatar Samuel Mondy
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Update Création fichier fq compatible FROGS

parent a9f3b358
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......@@ -10,6 +10,7 @@ for i in *.fasta.gz;
done
#pour 18S
mkdir FROGS
for i in *.fasta.gz;
do a=$(basename $i .gz);
zcat $i | awk '{if($0~">"){print $0}else{print "CGATAACGAACGAGACCT"$0"ANTACCGATGAATGGNT"}}' > FROGS/$a;
......@@ -34,13 +35,3 @@ gzip *.fq
for i in *fq.gz;do a=$(basename $i .fq.gz);echo $a;b=$(echo $a| sed 's/\./-/g');echo $b;mv $i $b\.fq.gz;done
for i in *fq.gz;do a=$(basename $i .fq.gz);echo $a;b=$(echo $a| sed 's/Hpreprocess_//g');echo $b;mv $i $b\.fq.gz;done
for i in *fq.gz;do a=$(basename $i .fq.gz);echo $a;b=$(echo $a| sed 's/JOUFFRAY-Drillaud_//g');echo $b;mv $i $b\.fq.gz;done
Import dans galaxy des données
création collection
FastQC sur la collection
MultiQC
Version 3.2
Problème de compatibilité fichier biom1 non reconnu par Cluster stat
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