conda activate cnvpipeline # the piepeline doesn't accept gziped genomes for the moment so we unzip gunzip genome.fa.gz samtools faidx genome.fa python ../cnvpipelines.py run simulation -nb 4 -r genome.fa -sp cattle -t delly lumpy pindel genomestrip -w simulation -p -n
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SVdetection / cnvpipelines
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Thomas Faraut
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