conda activate cnvpipeline # the piepeline doesn't accept gziped genomes for the moment so we unzip gunzip genome.fa.gz samtools faidx genome.fa python ../cnvpipelines.py run simulation -nb 4 -r genome.fa -sp cattle -t delly lumpy pindel genomestrip -w simulation -p -n
Forked from
SVdetection / cnvpipelines
139 commits behind the upstream repository.
Thomas Faraut
authored
| Name | Last commit | Last update |
|---|---|---|
| .. | ||
| README | ||
| genome.fa.gz | ||