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Created with Raphaël 2.2.024Sep2313121110964328Aug27261916141326Jul23221110985313Jun27May15Feb521Jan1714Dec125423Oct19527Sep24Aug232221201787632131Jul30252320191812643229Jun15141211876129May282422201817161593230Apr2724232019181716121198429Mar282723222120adding start_batch_nbmastermasterlumpy now requests 24Gb of memoryUpdate README.mdUpdate README.mdUpdate README.mdUpdate README.mdUpdate README.mdUpdate README.mdadding a genologin specific application propertiesadding svtypes.smkread group fixedget samples with batchesget_samples_batch addedrefactorrefactorMerge branch 'refactor' of forgemia.inra.fr:svdetection/cnvpipelines into refactorrestoring the symlin for build_variant_pop and built_resultsMerge branch 'refactor'movin common.smkresolved conflictpopsim fastq and fasta files are now temporarymade a file executableadding popsimulation.smkget_batches in mergebatch kept as the old versionmegebatches functionnalPreparing for simulation work-flow.all snakefiles for refactorrestoring genome.fa.gzPulled down update to submodule_dirnew implementationclean unused filesgit ignores now directories names oldrefbundle.smk becomes masterreorganization for refbundlenew organization for detectionSnekamakeCommand py --> smknew factorizationa new common.smknew factorizationnew installation proceduresUpdate README.mdupdating lib